Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060451.seq
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.83
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 1.1
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 28 1.4
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 28 1.4
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 28 1.4
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 28 1.4
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p... 27 1.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 27 1.9
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 27 1.9
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 27 2.5
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ... 26 4.4
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 4.4
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 4.4
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ... 26 4.4
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 5.8
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 5.8
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 26 5.8
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 5.8
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 5.8
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 0.83
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = +1
Query: 307 QPLPGMQHGFQPGF--QPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQ--GLQ 474
QP+ + G QP + G QP PG QP MQ PQ G MPQ G+Q
Sbjct: 633 QPMAPQRTGMQPMMPQRTGMQPQM-PGMQQPMAPQRTGMQPMAPQRTGMQPMMPQRTGMQ 691
Query: 475 -QLP 483
Q+P
Sbjct: 692 PQMP 695
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Frame = +1
Query: 331 GFQPGFQPGYQPGFAP---GY--PQPSGYPVPVMQQPG----PQAPGG 447
GF Q G PGFAP G+ PQP+G+ + QQP PQ GG
Sbjct: 110 GFMQPQQTGAIPGFAPQPTGFVQPQPTGF---MSQQPASFMQPQRTGG 154
Score = 25.8 bits (54), Expect = 5.8
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Frame = +1
Query: 307 QPLPGMQHGFQP---GFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQ 477
QP+ + G QP GFQ P PQ +G+ P+M PQ G M G QQ
Sbjct: 456 QPMMPQRTGLQPQMTGFQQPMVPQRTGMQPQMTGFQQPMM----PQRTGLQPQM-TGFQQ 510
Query: 478 --LPSRFGI 498
+P R G+
Sbjct: 511 PMVPQRTGM 519
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +2
Query: 140 MSHKPTPYSPNFPASHGYVPPPEGEKPNESYPMHPQSG 253
MS P P +P PA PPP P S P P G
Sbjct: 1712 MSVPPPPSAPPMPAGPPSAPPP--PLPASSAPSVPNPG 1747
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 107 IYEKGYETELTMSHKPTPYSPNFP---ASHGYVPPPEGEKPNESYPMHPQSGF 256
I + GY + + TPY+ NFP S V E PN S + P++GF
Sbjct: 413 ILQPGYVPQYYPVYHQTPYTQNFPNMSRSGSQVSDQVVESPNSS-TLSPRNGF 464
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 334 FQPGFQPGYQPGFAPGYPQ-PSGYPVPVMQQPGPQ 435
+ P QPGY P + P Y Q P P M + G Q
Sbjct: 410 YGPILQPGYVPQYYPVYHQTPYTQNFPNMSRSGSQ 444
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +2
Query: 164 SPNFPASHGYVPPPEGEKPNESYPMHPQSGFLAHHPL 274
S N P H P N P HP FL + L
Sbjct: 791 SSNIPLGHALGNPESNNSSNSFKPSHPSQSFLVNESL 827
>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 442
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Frame = +3
Query: 138 QCHINQHHTHQIS-------LQVMDMYLHQKEKSQMKVTPCILKAASWPT 266
+CH+ Q HQ LQ D HQK S + +T C+L PT
Sbjct: 232 RCHLYQRKIHQAKDHLLFSFLQCPDECYHQKRLSLIYLTTCLLILGKSPT 281
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +1
Query: 304 AQPLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGG 447
A P P G P QP Y P YP Y PV QP A G
Sbjct: 98 AAPQPYPPQGGYPQ-QPYYYPNQPNYYPAQPAYAQPVYAQPATSARRG 144
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 316 PGMQHGFQPGFQPGYQPGFAPG 381
PG G PG PG PG APG
Sbjct: 615 PGGMPGAAPGAAPGAAPGAAPG 636
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 325 QHGFQPGFQPGYQPGFAPG 381
Q G PG PG PG APG
Sbjct: 610 QAGGAPGGMPGAAPGAAPG 628
>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 402
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 170 NFPASHGYVPPPEGEKPNESYPMHPQSGFL 259
NFPA H PP N S+P +P ++
Sbjct: 248 NFPALHLVSPPVHTNFTNGSFPQYPNGTYM 277
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 189 DMYLHQKEKSQMKVTPCILKAASWPTTHSYATPRPTS 299
++ L +K+ +++ TP A S HS+ TPR TS
Sbjct: 398 ELKLRKKQTTKVSGTPKSKHAGSTQEWHSHTTPRSTS 434
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 143 SHKPTPYSPNFPASHGYV--PPPEGEKPNESYPMHPQSGFLAHHPL 274
SH P ++P P S V PPP + P+ YP+ S L H P+
Sbjct: 136 SHHPPLHNP-LPVSCQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPI 180
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 2.5
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +1
Query: 325 QHGFQPGFQPGYQPGFAPGYPQP--SGYPVPVMQQPGPQAPGGWMNMPQGLQQLPSRFGI 498
Q G +P F GFA P GY +P Q+P APG P + PS +
Sbjct: 176 QMGQRPEFAQNVSQGFAGQAPYNVRPGYGMPSNQKPPNFAPGMPAPGPTAVSASPSLQSM 235
Query: 499 P 501
P
Sbjct: 236 P 236
>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Frame = +1
Query: 310 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYP---VPV-----MQQPGPQAPGG 447
P P Q P + P Q GY P GYP P +QQP PGG
Sbjct: 14 PAPPQQAYGGPNYYPPQQNYPQQGYAPPQGYPQGGYPAQQPMYVQQPQASDPGG 67
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Frame = +1
Query: 340 PGFQPGYQPGFAPGYPQPSGYPV-PVMQQPGPQAPG 444
P P P Y P Y V QQP PQ PG
Sbjct: 180 PAISTSNLPSTTPLYIPPVNYGANQVSQQPNPQLPG 215
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 131 ELTMSHKPTPYSPNFPASHGYVPPPEGEK 217
E+T+++ S F S+G++P PEG++
Sbjct: 226 EVTINYGSEKGSAEFLFSYGFLPEPEGDR 254
>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 282
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 612 FXPTLFNKLCNLLFVSTPTKASNNSTXLMHY 520
F P LF +L +L FV + A+N L HY
Sbjct: 171 FEPRLFARLGDLYFVLAQSNATNYWFSLKHY 201
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +3
Query: 228 VTPCILKAASWPTTHSYATPRPTSWGTTPSGH 323
V P L AA PTT + T PTS P GH
Sbjct: 358 VQPQALAAAESPTTKAPTTKAPTS-EAPPKGH 388
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.8 bits (54), Expect = 5.8
Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Frame = +2
Query: 122 YETELTMSHKPTPYSPNFPASHG----YVPPPEGEKPNESYPMHPQSGFLAHHPLLCHTP 289
++ E H+ FPA H PPP KP E P P HH H P
Sbjct: 180 FDDERPKHHEFDDEDREFPAHHEPGEHMPPPPMHHKPGEHMPPPPM-----HHEPGEHMP 234
Query: 290 AYILGHNP 313
+ H P
Sbjct: 235 PPPMHHEP 242
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +1
Query: 331 GFQPGFQPGYQPGFAP--GYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQL 480
G G QP P G+P P+G +P Q Q + + P +QQ+
Sbjct: 211 GGMNGLQPFPTQAGLPNQGFPMPTGSQLPFSNQQSSQPSMQYSSHPSRMQQM 262
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 149 KPTPYSPNFPASHGYVPPPEGEKPNES 229
KPTP+ + PA V P E KP+ S
Sbjct: 252 KPTPFESHGPAKQISVQPSEHPKPSIS 278
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 210 EKSQMKVTPCILKAASWPTTHSYATPRPTSWGTTPSGHAA 329
+K+++ VTP ++ P S ATP PTS TP+ AA
Sbjct: 198 KKNKVAVTP----QSTLPPGFSPATPAPTSAANTPATIAA 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,115
Number of Sequences: 5004
Number of extensions: 54105
Number of successful extensions: 194
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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