Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060451.seq
(683 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 40 0.002
SB_46326| Best HMM Match : Scramblase (HMM E-Value=0) 40 0.002
SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12) 38 0.006
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 37 0.013
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 37 0.013
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051) 37 0.013
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38) 36 0.031
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 35 0.071
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 35 0.071
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12) 34 0.093
SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20) 34 0.093
SB_40954| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.093
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 33 0.22
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 31 0.66
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.87
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069) 31 1.1
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08) 31 1.1
SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28) 30 1.5
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083) 30 1.5
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23) 30 2.0
SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 3.5
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 29 3.5
SB_8344| Best HMM Match : PA (HMM E-Value=2.4e-19) 29 3.5
SB_7166| Best HMM Match : RBM1CTR (HMM E-Value=7.6) 29 3.5
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 29 3.5
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064) 28 6.1
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 28 6.1
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 28 6.1
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) 28 8.1
SB_37690| Best HMM Match : IgG_binding_B (HMM E-Value=4.2) 28 8.1
SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25) 28 8.1
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_985| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_51944| Best HMM Match : LRR_1 (HMM E-Value=7.7e-34) 28 8.1
SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_9505| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/63 (44%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 319 GMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMN-MPQGLQQLPS-RF 492
G Q G Q G QPG QP PG QP P QPG Q PGG P G Q S +
Sbjct: 1185 GNQKGIQSGSQPGIQPNGQPGVNQPGSQP---GNQPGNQ-PGGQAGPAPAGTQSGSSNQI 1240
Query: 493 GIP 501
G P
Sbjct: 1241 GYP 1243
Score = 36.7 bits (81), Expect = 0.017
Identities = 25/57 (43%), Positives = 26/57 (45%), Gaps = 15/57 (26%)
Frame = +1
Query: 316 PGMQHGFQPGFQPGYQPGFAP-----------GYPQPSGYP----VPVMQQPGPQAP 441
PG Q G QPG QPG Q G AP GYP P G+P P Q G Q P
Sbjct: 1209 PGSQPGNQPGNQPGGQAGPAPAGTQSGSSNQIGYPTPQGFPPSFGFPTYNQYGAQNP 1265
>SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)
Length = 554
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/40 (52%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 325 QHGFQPGFQPGYQPGFAPGY-PQPSGYPVPVMQQPGPQAP 441
Q G+ P Q GY P PGY PQ GY PV QQPG P
Sbjct: 258 QQGYPPP-QGGYPPPQQPGYNPQQPGYGAPVAQQPGYPPP 296
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/37 (56%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = +1
Query: 349 QPGYQPGFAP--GYPQPSG-YPVPVMQQPG--PQAPG 444
Q GY G P GYP P G YP P QQPG PQ PG
Sbjct: 249 QSGYA-GQPPQQGYPPPQGGYPPP--QQPGYNPQQPG 282
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +2
Query: 551 AFVGVETNNKLHSLLNSVGXKKFYYAD*GIMIAGTRKTCCG 673
AF G ETNNK + + N++G + F+ A+ TR+ CCG
Sbjct: 297 AFTGFETNNK-YKITNNLGQQVFFAAE--DTDCCTRQ-CCG 333
>SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12)
Length = 828
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = +1
Query: 316 PGMQHGFQ--PGFQPGYQ--PGFAPGYPQPSGY 402
PG G+ PG+ PGY PG+ PGYP P GY
Sbjct: 571 PGYGPGYTNTPGYGPGYTNPPGYGPGYPNPPGY 603
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +1
Query: 316 PGMQHGFQ--PGFQPGYQ--PGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGL 471
PG G+ PG+ PGY PG+ PGY P GY P P PG + GL
Sbjct: 561 PGYGPGYTNPPGYGPGYTNTPGYGPGYTNPPGYG-PGYPNPPGYGPGYTNPLATGL 615
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 340 PGFQPGYQ--PGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMP 462
PG+ PGY PG+ PGY P GY PG P G+ N P
Sbjct: 551 PGYGPGYTNPPGYGPGYTNPPGYGPGYTNTPG-YGP-GYTNPP 591
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 346 FQPGYQ--PGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMP 462
++PGY PG+ PGY P GY PG P G+ N P
Sbjct: 543 WEPGYTNPPGYGPGYTNPPGYGPGYTNPPG-YGP-GYTNTP 581
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = +1
Query: 340 PGFQPGYQ--PGFAPGYPQPSGYPVPVMQQPG 429
PG+ PGY P + PGY GY PG
Sbjct: 781 PGYGPGYTNPPDYGPGYTNSLGYGPRYTNPPG 812
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = +1
Query: 343 GFQPGYQ--PGFAPGYPQPSGY 402
G+ PGY PG+ PGY P Y
Sbjct: 772 GYGPGYTNPPGYGPGYTNPPDY 793
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 310 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYP 405
P PG G +PG++PGY P F PG P P
Sbjct: 482 PRPGRTPGRRPGYRPGYIPPFVPGIIHPGRRP 513
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +1
Query: 310 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPG 444
P PG + +PG PG +PG+ PGY P VP + PG + PG
Sbjct: 474 PRPGYRPWPRPGRTPGRRPGYRPGYIPPF---VPGIIHPG-RRPG 514
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +1
Query: 313 LPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPG 444
+PG G +PG +PG P F PG PS P ++PGP+ PG
Sbjct: 520 IPGRTPGRRPGGRPGNIPPFVPGLIIPSRRP---GKRPGPR-PG 559
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 316 PGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGG 447
PG + G++PG+ P + PG +P P + + + PGG
Sbjct: 488 PGRRPGYRPGYIPPFVPGIIHPGRRPGWRPGGIPGRTPGRRPGG 531
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 37.1 bits (82), Expect = 0.013
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 316 PGMQHGFQPGFQPGYQPGFAPGYPQPSGYPV 408
PG G+ PG PGY PG+AP Y P+
Sbjct: 15 PGYPPGYAPGHPPGYPPGYAPDYHTVMNSPI 45
Score = 36.7 bits (81), Expect = 0.017
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 319 GMQHGFQPGFQPGYQPGFAPGYP 387
G G+ PG+ PGY PG PGYP
Sbjct: 8 GHPPGYAPGYPPGYAPGHPPGYP 30
Score = 36.7 bits (81), Expect = 0.017
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 316 PGMQHGFQPGFQPGYQPGFAPGY 384
PG G+ PG+ PG+ PG+ PGY
Sbjct: 11 PGYAPGYPPGYAPGHPPGYPPGY 33
>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
Length = 421
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/48 (45%), Positives = 24/48 (50%)
Frame = +1
Query: 340 PGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLP 483
PG QP Q G+ PGY QP P P P PGG+ P G QQ P
Sbjct: 159 PGTQPPGQGGY-PGYNQP-----PPGHYPAPGQPGGYYPPPGGYQQPP 200
>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
Length = 1301
Score = 35.9 bits (79), Expect = 0.031
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 316 PGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVM-QQPGPQAPGGWMNMP-QGLQQLPSR 489
P + + PG+ P + G PQ GYP V + P P+ PG + P QG+Q++P
Sbjct: 579 PQQFNQYPPGYTPPHLTRAPMGGPQGIGYPQGVQGRMPYPRPPGDGVAGPAQGMQRMPGP 638
Query: 490 FGIPFHV 510
+ H+
Sbjct: 639 MPMSGHL 645
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 34.7 bits (76), Expect = 0.071
Identities = 24/57 (42%), Positives = 26/57 (45%)
Frame = +1
Query: 307 QPLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQ 477
Q + GMQ G Q Q G QPG G Q P MQQ G Q G M QG+ Q
Sbjct: 1960 QGMQGMQQGMQHPMQQGMQPGMQMGMHQGMQQMQPNMQQ-GMQ-QGMQQGMQQGIPQ 2014
Score = 32.3 bits (70), Expect = 0.38
Identities = 28/74 (37%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +1
Query: 307 QPLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYP---VPVMQQPGPQAPGGWMNMPQGLQQ 477
Q P MQ G Q G Q G Q G G P PS P P M Q Q+ +MPQ Q
Sbjct: 1991 QMQPNMQQGMQQGMQQGMQQGIPQGMP-PSIQPQNMQPGMAQSMSQSVA--QSMPQNYAQ 2047
Query: 478 LPSRFGIPFHVXQL 519
S+ G+ V Q+
Sbjct: 2048 SMSQ-GMQSTVQQM 2060
Score = 31.5 bits (68), Expect = 0.66
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Frame = +1
Query: 310 PLPGMQHGFQPGFQPGY-----------QPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMN 456
P MQ G QPG Q G +PG PG+ P QQ P P
Sbjct: 1737 PAGFMQQGMQPGMQQGMPNTAVNAGQMQRPGMRPGWQMYQQNPQQQQQQQNPGVPN--QG 1794
Query: 457 MPQGLQQLPSRFGIP 501
M Q Q+ + G+P
Sbjct: 1795 MQQQFPQMNQQQGVP 1809
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/58 (39%), Positives = 28/58 (48%)
Frame = +1
Query: 307 QPLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQL 480
Q + GMQ G Q G Q G Q G Q +P+ QPG Q M M QG+QQ+
Sbjct: 1946 QGMQGMQQGMQ-GIQQGMQ-----GMQQGMQHPMQQGMQPGMQ-----MGMHQGMQQM 1992
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 34.7 bits (76), Expect = 0.071
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Frame = +1
Query: 319 GMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPG---------PQAPGGWMNMPQGL 471
GMQ G + G P PG PG+P + +PG QAPG PQ +
Sbjct: 132 GMQPGIRGGMMPQQGPGVRPGFPPAGSRQMAPGMRPGVPHQQMMMQQQAPGMGRGGPQ-M 190
Query: 472 QQLPSRFGIP 501
QL R G+P
Sbjct: 191 MQLGPRPGVP 200
>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
Length = 695
Score = 34.3 bits (75), Expect = 0.093
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 331 GFQPGFQ-PGYQPGFAPGYPQPSGYPVPVMQQPGPQAPG 444
G PG + PG QPG + GY Q GYP P A G
Sbjct: 435 GCMPGLEIPGCQPGVSQGYQQEQGYPQGYSGYPSMAAGG 473
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +1
Query: 304 AQP-LPGMQH--GFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAP 441
AQP LP Q +QP +Q Y + YP PS YP P P P P
Sbjct: 502 AQPSLPNPQSTISYQP-YQSQYPYPYPYPYPYPSPYPYPAHYYP-PSLP 548
>SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20)
Length = 315
Score = 34.3 bits (75), Expect = 0.093
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = +1
Query: 310 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGW-MNMPQGLQQLPS 486
P+ + +QP QPGY+P + PGYP P P P P G M MP +L
Sbjct: 46 PVYAKPNNYQPPPQPGYRPPY-PGYP-----PTSSSATPYPATPHGMPMPMPAVEDKLRR 99
Query: 487 RFGIPFHVXQLIMHQXS*IIRSFCXGRDKQQ 579
+ F Q+ + Q + G +K Q
Sbjct: 100 KAKATFEQAQIELDQLNRTQEELKRGGEKLQ 130
>SB_40954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 34.3 bits (75), Expect = 0.093
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 310 PLPGMQHGFQPGF-QPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPG 444
P+ G Q G PG+ Q G P PG P+ G P Q P P +PG
Sbjct: 39 PMMG-QFGMFPGWPQMGMPPPPGPGQPEMPGQPQVTPQTPSPASPG 83
>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1486
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/49 (42%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +1
Query: 310 PLPGMQHGFQPGFQ--PGYQPGFAPGYPQPSGYPVPV-MQQPGPQAPGG 447
P P M P F P PG P PQP P P MQ PGP P G
Sbjct: 1237 PPPAMPPDGPPKFMGLPPPPPGMRPMPPQPPFMPPPPRMQPPGPPGPPG 1285
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +1
Query: 340 PGFQPGYQ-PGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLPSRFGIP 501
P PG P PG P G+P V PGP GW P P R GIP
Sbjct: 1818 PAGPPGLDGPPGPPGPQGPKGWP-GVPGPPGPPGAYGWKGYPGNPAGPPGRDGIP 1871
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +1
Query: 364 PGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLPSRFG 495
PG G P G P P PGPQ P GW +P G P +G
Sbjct: 1815 PGNPAGPPGLDGPPGP----PGPQGPKGWPGVP-GPPGPPGAYG 1853
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 307 QPLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPG-GWMNMPQGLQQ 477
Q G Q+ P Q GY PGY +P V M Q G Q+ G+ QG QQ
Sbjct: 242 QGFTGKQYSQHP--QQGYNQPSNPGYQEPPTMNVGQMTQQGYQSDSQGYQQQNQGFQQ 297
>SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 31.9 bits (69), Expect = 0.50
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +3
Query: 78 NSIVDSRDN*YTKKVTKRS*QCHINQHHTHQISLQVMDMYLHQKEKSQMKVTPCILKAAS 257
N + D+ DN +K KRS ++ +HQ YL + K + + T +LK
Sbjct: 367 NDLSDADDNDVKRKKRKRSISRDLSSEMSHQSKTHANTHYLKKSPKGENQKT--MLKIPV 424
Query: 258 WPTTHSYATPRP-TSWGTTPSGHAAWVPARISTWLSTR 368
T + ++ P S PS + W+ W++TR
Sbjct: 425 GGTLGALSSTEPIQSQQNKPSFNYCWIDK--GAWIATR 460
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 355 GYQPGFAPGYPQPSGYPVPVMQQPGPQAP 441
GY PG P P G P+M PGPQ P
Sbjct: 612 GY-PGMPPRRPSHMGQQAPMMSSPGPQDP 639
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 31.1 bits (67), Expect = 0.87
Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Frame = +1
Query: 310 PLPGMQH--GFQPGFQPGY----QPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMN----M 459
P PGM GF P PG PG P P P G P P M+QP P P ++ M
Sbjct: 253 PPPGMMPPPGFPPMGMPGMGGMPPPGMPPPMP-PGGMP-PNMEQPPPPPPSSGVSNSGMM 310
Query: 460 PQGLQQLPSRFG 495
P +Q P G
Sbjct: 311 PPHMQN-PQHMG 321
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 137 TMSHKPTPYSPNFPASHGYVPPPEGEKPNESYPMHPQSGFLAHH 268
T ++ P PY+ PA G V P G P YP HPQ + +H
Sbjct: 666 TRAYPPHPYA-QVPAPCGNVQPQHGH-PG-MYPQHPQGSYPQYH 706
>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
Length = 135
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 310 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVM-QQPGPQAPG 444
P PG G+ P GY P GYP GYP P GP PG
Sbjct: 32 PAPG---GYPPA-PGGYPPSGGYGYPPAGGYPPPQPGYAGGPPPPG 73
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +1
Query: 310 PLPGMQHGFQPGFQPGYQPGFA--PGYPQPSGYPVPVMQQPGPQAPGGWMNMP 462
P P Q+G P QP P + PGY Q P P Q P G+ P
Sbjct: 81 PPPSGQYGAPPTSQPYGAPPTSGYPGYQQHPPPPQPSAQSYNAPPPAGYGQQP 133
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 337 QPGFQPGYQPGF-APGYPQPSGYPVPVMQQPGPQAPG 444
QPG+ PG +PG P P+G P GP A G
Sbjct: 993 QPGYPGAMTPGAPSPGVPSPTGLPPSGPPPTGPPADG 1029
>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
Length = 293
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 304 AQPLPGMQHGFQPGFQPGYQPGFAP-GYPQPSGYPVPVMQQPG 429
AQP P + QP Q QPG+ P GYP YP QPG
Sbjct: 165 AQPYPQQGYPPQPPPQAYPQPGYPPQGYPPTGPYP---QTQPG 204
>SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/62 (41%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Frame = +1
Query: 310 PLPGMQ-HGFQPGFQPGY-QPGFAPGYPQPSGY----PVPVMQQPGPQAPGGWMNMPQGL 471
P PG Q +G PG Q GY P GY P G P P Q GP A PQG
Sbjct: 279 PPPGQQGYGPPPG-QQGYGPPPGQQGYGSPPGQQGYGPPPGQQGYGPPAGQQGYGPPQGQ 337
Query: 472 QQ 477
QQ
Sbjct: 338 QQ 339
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 19/75 (25%)
Frame = +1
Query: 319 GMQHGFQPGFQPGYQPGF-APGY--------PQPSGYP------VPVMQQPG---PQAPG 444
G QH +PG P QPGF +P QP G+P P QPG PQ PG
Sbjct: 549 GFQHQQRPGAPPTSQPGFPSPQMQEPMQLPTSQPGGFPPQQRPGAPPTSQPGGFPPQRPG 608
Query: 445 -GWMNMPQGLQQLPS 486
M+ P + PS
Sbjct: 609 MPPMSQPSSMHMQPS 623
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Frame = +1
Query: 310 PLPGMQHGFQ-PGFQPG-YQPGFAPGYP---QPSGYPVPVMQQPGPQAPGGWMNMPQGLQ 474
P P MQ Q P QPG + P PG P QP G+P P P P G
Sbjct: 567 PSPQMQEPMQLPTSQPGGFPPQQRPGAPPTSQPGGFPPQRPGMPPMSQPSSMHMQPSGQP 626
Query: 475 Q 477
Q
Sbjct: 627 Q 627
>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
Length = 834
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 125 ETELTMSHKPTPYSPNFPASHGYVPPPEGEKPNESYP 235
++ LT S KP+P + P+S G+V PP +P +P
Sbjct: 519 KSALTSSKKPSPLATKPPSSAGHVNPPP-SRPQTHHP 554
>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
Length = 440
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +1
Query: 364 PGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLP 483
PGF PG+P P G P+ G PG M QG+ Q P
Sbjct: 134 PGFPPGFPPPMGMPM----MSGQHMPG--MPPMQGMHQGP 167
>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
Length = 1178
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 152 PTPYSPNFPASHGYVPPPEGEKPNESYPMHPQSGFLAHHP 271
P + + H Y PP + P+E + HP SG+ + P
Sbjct: 51 PEDDARTYDDEHPYTPPGRRQVPSEPWYHHPDSGYPSSSP 90
>SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 316 PGMQHGFQPGFQPGYQPGFAPG 381
PGM G PG G PG PG
Sbjct: 271 PGMDSGIDPGLDSGLDPGMNPG 292
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 316 PGMQHGFQPGFQPGYQPGFAPG 381
PGM G PG G PG PG
Sbjct: 291 PGMDSGMDPGLDSGLDPGLDPG 312
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 316 PGMQHGFQPGFQPGYQPGFAPG 381
PG+ G PG PG G PG
Sbjct: 231 PGLDSGLDPGIDPGMDSGMGPG 252
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 319 GMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPG 429
GM G PG G PG PG G + PG
Sbjct: 224 GMDSGMDPGLDSGLDPGIDPGMDSGMGPGMDSGMDPG 260
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 316 PGMQHGFQPGFQPGYQPGFAPG 381
PG+ G PG PG G PG
Sbjct: 279 PGLDSGLDPGMNPGMDSGMDPG 300
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 316 PGMQHGFQPGFQPGYQPGFAPG 381
PG+ G PG PG G PG
Sbjct: 299 PGLDSGLDPGLDPGMDSGIDPG 320
>SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 152 PTPYSPNFPASHGYVPPPEGEKPNESYPMHPQSGFLAHHP 271
P + + H Y PP + P+E + HP SG+ + P
Sbjct: 95 PEDDARTYDDEHPYTPPGRRQVPSEPWYHHPDSGYPSSSP 134
>SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 12/48 (25%)
Frame = +1
Query: 340 PGFQ--PGYQ--PGFAPGYPQPSGYP-------VPVMQ-QPGPQAPGG 447
PGFQ PG PG APG P P GYP +P PGP P G
Sbjct: 273 PGFQGPPGLDGMPG-APGMPGPQGYPGGSGAPGIPGSPGMPGPPGPAG 319
>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1422
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 146 HKPTPYSPNFPASHGYVPP-PEGEKPNESYPMHPQSGFLAHH 268
H P P S Y+PP P+G + +H +S F AHH
Sbjct: 1081 HGDRPERPPEELSRMYLPPHPDGAALMHPFLIHRESPFTAHH 1122
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +1
Query: 316 PGMQHGFQPGFQPGYQ-PGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQG 468
PG Q P PG P PG+ P G P + PG P G +N P G
Sbjct: 54 PGPQGPNGPKGPPGLPGPPGPPGFQGPPGNPAGAIGPPGLPGPNG-VNGPPG 104
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = +1
Query: 352 PGYQPGFA-PGYPQ-PSGYPVP--VMQQPGPQAPGGWMNM--PQGLQQLPSRFGIP 501
PGYQ P PQ P+G P P ++ PGP G + P G Q P G+P
Sbjct: 245 PGYQGNHGNPAGPQGPNGLPGPNGILGPPGPPGDMGPPGLPGPPGPQMPPGPPGLP 300
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 340 PGFQPGYQPGFAPGY-PQPSGYPVPVMQQPGPQAP 441
P QP Y P AP Y P PS YP P+ P AP
Sbjct: 194 PPTQPSYPP-TAPSYPPTPSSYP-PIAASYPPTAP 226
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 340 PGFQPGYQPGFAPGYPQP--SGYPVPVMQQPGPQAPGGWMNMPQGLQQLPSRFG 495
P Q Y P ++P P SG P+ V+ PGPQ+P G Q +Q +G
Sbjct: 169 PAQQYLYTPMYSPTQSAPTLSGSPLTVIP-PGPQSPNGVAPQVQTIQPFYIDYG 221
>SB_8344| Best HMM Match : PA (HMM E-Value=2.4e-19)
Length = 380
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 149 KPTPYSPNFPASHGYVPPPEGEKPNESYPMHPQS 250
K P +P +PA+ G PE E P P+ P S
Sbjct: 206 KGDPLTPGYPATDGIYRRPEAEVPFPKIPVKPIS 239
>SB_7166| Best HMM Match : RBM1CTR (HMM E-Value=7.6)
Length = 147
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 388 QPS-GYPVPVMQQPGPQAPGGWMNMPQG 468
QP GYP P ++P P PG M M QG
Sbjct: 118 QPDEGYPGPSYREPPPPYPGQGMEMRQG 145
>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 599 CSINCVICCLSRPXQKLLIIQL 534
C VICC P QK L++QL
Sbjct: 736 CMCKAVICCRVTPLQKALVVQL 757
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/66 (39%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = +1
Query: 316 PGMQHGFQPGFQPGYQPGFAPGY--PQPSGY-PVPVMQQPG-PQAPGGWMNMPQGLQQLP 483
PG H Q G Q G+ P P P GY P P Q G PQ GG PQ QQ
Sbjct: 815 PGQAHYQQLGAAAPNQGGYHPQQPPPPPQGYEPQPQYQPQGPPQYYGG--PPPQQQQQRQ 872
Query: 484 SRFGIP 501
+ G P
Sbjct: 873 PQSGPP 878
>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 579
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +3
Query: 126 KRS*QCHINQHHTHQISLQVMDMYLHQKEKSQMKVTPCILKAASWPTTHSYATPRPTSWG 305
K S + HI+ + +SL D QK V+P +L S ++ ++ T+W
Sbjct: 168 KVSSEAHIHGRQSFPLSL---DHCCDQKRSFSFSVSPLVLSCVSSSSSSAHCDTSSTAWQ 224
Query: 306 TTP 314
TP
Sbjct: 225 MTP 227
>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
Length = 1230
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = +1
Query: 310 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQ 465
P P Q Q QP P PQ P+P QQ Q P M PQ
Sbjct: 864 PEPASQMNSQFNDQPNLAPYEPFARPQQPPAPMPPQQQSPYQPPAPTMQQPQ 915
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +1
Query: 310 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGP 432
P+ GM P PG+ G P P P G P P GP
Sbjct: 190 PMAGMPPPPPPPPPPGFPGGAPPPPPPPFGAPPPPALNGGP 230
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +1
Query: 337 QPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQ 435
Q G QPG P P P PV QQP Q
Sbjct: 2112 QQGMPVNIQPGPPPAPPPPPVQPVGAQQQPDDQ 2144
>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 406
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +2
Query: 137 TMSHKPTPYSPNFPASHGYVPP-PEGEKPNESYPMHPQSGFLAHH---PLLCHTPAYIL 301
T + PTP++ P H +PP P + SYP + + + H LL H A +L
Sbjct: 177 TYNIPPTPHTSIPPTPHTSIPPTPRPTYKHPSYPSYKHPSYPSSHIQASLLPHIQASLL 235
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +1
Query: 340 PGFQPGYQPGFAPGYPQPSGYPVPVMQQP-----GPQAPGGWMNMPQGLQQLPSR 489
PG G P YP P G+P P P GP P G P+ Q++PS+
Sbjct: 462 PGGMRGMPPPPMGMYPPPRGFPPPPFGPPPPFYRGPPPPRGMPPPPR--QRMPSQ 514
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 152 PTPYSPNFPASHGYVPPPEGEKPNESYPMHP 244
P P +P +P Y PPP PN YP P
Sbjct: 149 PPPPNPPYPPPL-YPPPPNPPPPNAPYPPPP 178
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 152 PTPYSPNFPASHGYVPPPEGEKPNESYPMHP 244
P P PN P Y PPP PN YP P
Sbjct: 165 PNPPPPNAP----YPPPPYPPPPNPPYPPPP 191
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 146 HKPTPYSPNFPASHGYVPPPEGEKPNESYPMHPQS 250
+ P P +PN P + PPP PN YP P +
Sbjct: 195 YPPPPNAPNPPPPNPPYPPPP-NAPNPPYPPPPNA 228
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 307 QPLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGP 432
QP+P + P QP P P P PS P+P ++P P
Sbjct: 1025 QPVPPKRKASPPSAQP-LPPPRKPS-PPPSAVPIPPPRKPSP 1064
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 152 PTPYSPNFPASHGYVPPPEGEKPNESYPMHP 244
P P P P++ VPPP P + P HP
Sbjct: 1071 PPPRQPPPPSTSQPVPPPRQPDPIPTNPAHP 1101
>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1321
Score = 27.9 bits (59), Expect = 8.1
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Frame = +1
Query: 307 QPLPGMQ----HGFQPGFQPGYQ--PGFAPGYPQPSGYPV--PVMQQPGPQAPGGWMNMP 462
QPLPG Q QP PG Q P + P G V P+ QP P PG +N P
Sbjct: 929 QPLPGNQVNPPMSSQPQPPPGNQVNPPMSSQPQPPPGNQVNPPMSSQPQP-PPGNQVNPP 987
Query: 463 QGLQQLP 483
Q P
Sbjct: 988 MSSQPQP 994
>SB_37690| Best HMM Match : IgG_binding_B (HMM E-Value=4.2)
Length = 263
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 316 PGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQ--PGP 432
PG G PG PG PG APG P P PV +Q PGP
Sbjct: 16 PGPNKG-PPGPGPGPGPGPAPG-PGPIVQPVVPVQPVIPGP 54
>SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25)
Length = 311
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 316 PGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQ--PGP 432
PG G PG PG PG APG P P PV +Q PGP
Sbjct: 175 PGPNKG-PPGPGPGPGPGPAPG-PGPIVQPVVPVQPVIPGP 213
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Frame = +3
Query: 246 KAASWPTTHSYATPRPTSWGTTPSG---HAAWVP 338
K W H P W TTP G H W P
Sbjct: 277 KLVKWDYCHDTTPPATPPWPTTPPGCHFHGKWYP 310
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/62 (38%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +1
Query: 307 QPLPGMQHGFQPGFQPGYQP--GFAPG-YPQPSGYPVPVMQQ---PGPQAPGGWMNMPQG 468
QP Q QP QPG QP F PG PQ P QQ PG Q ++ Q
Sbjct: 618 QPFRADQQTQQPFHQPGQQPQQSFRPGQQPQQPFRPEQQSQQSSRPGQQCQPQFLPDQQP 677
Query: 469 LQ 474
LQ
Sbjct: 678 LQ 679
>SB_985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 310 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVM-QQPGPQAPGG 447
P+P Q +Q G G AP YPQ GY P+ PG GG
Sbjct: 144 PMPCAQGPYQAPL--GTYQGPAPPYPQLPGYGPPLQGDYPGGYVAGG 188
>SB_51944| Best HMM Match : LRR_1 (HMM E-Value=7.7e-34)
Length = 409
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/71 (33%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Frame = +1
Query: 325 QHGFQPGFQPGYQPGFAPGYPQ-----PSGYPVPVMQ-----QPGPQAPGGWMNMPQGLQ 474
QH QP YQP P PQ P+ P+P MQ P G M L+
Sbjct: 81 QHPQMTAMQPQYQPLLVPPPPQFLPMSPAMAPIPTMQPVMGYSPTVVPTSGVPQMDNKLR 140
Query: 475 QLPSRFGIPFH 507
LP F FH
Sbjct: 141 VLPDWFA-SFH 150
>SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 161 YSPNFPASHGYVPPPEGEKPNESYPMHPQSGFLAHHPLLCHTP 289
Y P + HG PPPE P E P+ L + LL + P
Sbjct: 149 YPPEECSPHGECPPPEECSPGEHVPLLKNVPLLENVLLLENVP 191
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +1
Query: 373 APGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLPSR 489
APGYP P P P M+ P P G M P + P R
Sbjct: 296 APGYPPPQYMPHPRMRPPTRIPPPG-MGPPPRIPPPPIR 333
>SB_9505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 27.9 bits (59), Expect = 8.1
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +2
Query: 104 LIYEKGYETELTMSHKPTPYSPNFPASH-GYVPP-PEGEKPNESYPM-HPQSGFLAHHP- 271
L YE G+ + + M H P++ H YV P E + SY M HP ++ HP
Sbjct: 32 LSYEMGHPSYV-MGH------PSYVMGHPSYVMGHPSYEMGHPSYVMGHPS--YVMGHPS 82
Query: 272 -LLCHTPAYILGH 307
++CH P+Y++GH
Sbjct: 83 YVMCH-PSYVMGH 94
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 206 EGEKPNESYPMHPQSGFLAHHP 271
EG +PNESY M P + HP
Sbjct: 233 EGSEPNESYQMLPIDACVKQHP 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,261,784
Number of Sequences: 59808
Number of extensions: 443660
Number of successful extensions: 1958
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1845
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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