Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060451.seq
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                28   0.095
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      27   0.13 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.2  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   2.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   4.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.7  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    22   4.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 0.095
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 161 YSPN-FPASHGYVPPPEGEKPNESYPMHPQSGFLAHHPLLCHTPAYILG 304
           +SP  +P++ G++PP      +     HP  G   HH    HT    +G
Sbjct: 300 HSPGVYPSTAGFLPPSYHPHQHHPSQYHPHRGSSPHHQHGNHTMGPTMG 348


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +2

Query: 122 YETELTMSHKPTPYSPNFPASH--GYVPPPEGEKPNESYPMHPQSGFLAHHPLLCHTPAY 295
           +  E + S+ P  Y    P++H      PPE    +   P++     L HH +L     Y
Sbjct: 33  HSAESSASNSPDHYERFSPSTHLMDLSSPPE----HRDLPIYQSHHHLHHHQVLYQQSPY 88

Query: 296 ILGHNP 313
           ++  NP
Sbjct: 89  LMYENP 94


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 310  PLPGMQHGFQPGFQPGYQ 363
            PLP ++HG   GF  GY+
Sbjct: 1030 PLPELRHGDIQGFNVGYR 1047


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 310  PLPGMQHGFQPGFQPGYQ 363
            PLP ++HG   GF  GY+
Sbjct: 1026 PLPELRHGDIQGFNVGYR 1043


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +1

Query: 376 PGYPQPSGYPVPVMQQPGPQAPGGWMNMPQG 468
           P  PQP   P P     GP  P   +  PQG
Sbjct: 24  PNVPQPGRRPFPTFPGQGPFNPK--IKWPQG 52


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 316 PGMQHGFQPGFQPGYQPGFAPGYP 387
           PGM HG QP    G   G A G P
Sbjct: 327 PGMGHGLQPPDLAGTSQGSA-GLP 349


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 255 SWPTTHSYATPRP 293
           SW  THSY  P P
Sbjct: 227 SWRITHSYFMPDP 239


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 176 PASHGYVPPPEGEKPNESYPMHPQ 247
           PAS GYV PP   +  +   + PQ
Sbjct: 111 PASPGYVQPPTKHQKLDQKFIFPQ 134


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 376 PGYPQPSGYPVPVMQQPGPQAP 441
           P  PQP   P P     GP  P
Sbjct: 10  PNVPQPGRRPFPTFPGQGPFNP 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,301
Number of Sequences: 438
Number of extensions: 4684
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)