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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060450.seq
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)            26   0.89 

>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
          Length = 350

 Score = 26.2 bits (55), Expect(2) = 0.89
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 586 SALA*KRKTSSS*CPNGTWCR 524
           SA+  + +TS+  CP G WCR
Sbjct: 240 SAMVREDETSAGGCPPGFWCR 260



 Score = 23.4 bits (48), Expect(2) = 0.89
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
 Frame = -1

Query: 547 CPNGTWCRGCRYWDKL*IK-----WCDGXXNIXSDNSSQ 446
           CP G WC+   Y D          WC    NI  D +SQ
Sbjct: 297 CPPGFWCKRGVYNDNDDGNCPPGFWCKKKRNIKEDPTSQ 335


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,180,441
Number of Sequences: 59808
Number of extensions: 268906
Number of successful extensions: 518
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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