Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060450.seq
         (679 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77494-1|AAB67052.1| 1037|Homo sapiens RANBP8 protein.                 31   5.0  
AB209602-1|BAD92839.1|  485|Homo sapiens importin 8 variant prot...    31   5.0  
AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    30   6.6  

>U77494-1|AAB67052.1| 1037|Homo sapiens RANBP8 protein.
          Length = 1037

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 297 C*YYFTKMLMLIQNFINIEITTYID--KHLSIXF 202
           C  YFT M+ L+ N++ I+  T +   KHL I F
Sbjct: 686 CFEYFTDMMPLLHNYVTIDTDTLLSNAKHLEILF 719


>AB209602-1|BAD92839.1|  485|Homo sapiens importin 8 variant
           protein.
          Length = 485

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 297 C*YYFTKMLMLIQNFINIEITTYID--KHLSIXF 202
           C  YFT M+ L+ N++ I+  T +   KHL I F
Sbjct: 162 CFEYFTDMMPLLHNYVTIDTDTLLSNAKHLEILF 195


>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 223 IDICSYLYIYKVLY*H*HLCEII--LAESYDARYYCIQ 330
           I +C Y YIY  +Y H H+C  I      Y   Y CIQ
Sbjct: 91  IHMCVYTYIYVYIYTHIHICVHINMYVSIYVYIYTCIQ 128


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,700,754
Number of Sequences: 237096
Number of extensions: 1271942
Number of successful extensions: 1361
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)