Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060450.seq
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   6.2  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   6.2  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 325 YNNNEHRNSLLILFHKDVNVNTE 257
           YNNN + N    L++K+  +N E
Sbjct: 333 YNNNNYNNYNKKLYYKNYIINIE 355


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 100 LWLLLRPFHYRIKWKPK 150
           LW+    + Y++KW PK
Sbjct: 75  LWVEQSWYDYKLKWDPK 91


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 100 LWLLLRPFHYRIKWKPK 150
           LW+    + Y+++W+PK
Sbjct: 79  LWVEQSWYDYKLRWEPK 95


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 100 LWLLLRPFHYRIKWKPK 150
           LW+    + Y+++W+PK
Sbjct: 79  LWVEQSWYDYKLRWEPK 95


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 125 WNGLKSNHSIQTFYIARYHNNIVL 54
           WN   +   I T Y+ RY +NI L
Sbjct: 103 WNEDLNWQPIATKYLRRYEDNIFL 126


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 125 WNGLKSNHSIQTFYIARYHNNIVL 54
           WN   +   I T Y+ RY +NI L
Sbjct: 118 WNEDLNWQPIATKYLRRYEDNIFL 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,487
Number of Sequences: 438
Number of extensions: 2700
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)