Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060450.seq
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g05150.1 68417.m00773 octicosapeptide/Phox/Bem1p (PB1) domain...    31   0.93 
At1g01580.1 68414.m00075 ferric-chelate reductase, putative simi...    29   3.7  

>At4g05150.1 68417.m00773 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein various predicted proteins
           contains Pfam profile PF00564: PB1 domain
          Length = 477

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 480 PSHHLIQSLS---QYLQPLHHVPFGH*DELVFRFQARAE*VFSDRKRPCLRSV 629
           P +H++Q +    QYLQ  HHVP G+      +     + V+    RP + +V
Sbjct: 377 PGNHMVQPVQMPGQYLQQYHHVPMGYHQPQTHQMAGPGQ-VYGGTVRPVMMAV 428


>At1g01580.1 68414.m00075 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile: PF01794 ferric
           reductase like transmembrane component
          Length = 725

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 34  FVILIKSNTMLLW*RAI*NVCMLWLLLRPFHYRIKWKPK*RLIF 165
           F  +IK  T  L         MLW+++    YR KW P  R+ F
Sbjct: 19  FKDMIKGVTKFLMMVIFLGTIMLWIMMPTLTYRTKWLPHLRIKF 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,224,298
Number of Sequences: 28952
Number of extensions: 181101
Number of successful extensions: 304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)