Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060449.seq
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 111 5e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 100 9e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 84 9e-17
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 33 0.22
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 32 0.38
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.38
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 31 0.87
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 31 1.1
SB_33453| Best HMM Match : BRF1 (HMM E-Value=1.4) 30 1.5
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_34097| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_26205| Best HMM Match : Interferon (HMM E-Value=3.4) 28 8.1
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 28 8.1
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 111 bits (267), Expect = 5e-25
Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
Frame = +2
Query: 266 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 445
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 446 TREHALLAFTLGVKQLIVGVNK--WIPLNHHTVSP 544
TREHA+L +LGV QLIV +NK + L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 100 bits (240), Expect = 9e-22
Identities = 47/116 (40%), Positives = 71/116 (61%)
Frame = +2
Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 436
G T+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G +
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266
Query: 437 NGQTREHALLAFTLGVKQLIVGVNKWIPLNHHTVSPDLRKSRRKYPHTSRRLGYNP 604
GQTREHA+LA T GVK L++ VNK + + K +++G+NP
Sbjct: 267 GGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = +1
Query: 136 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERDR 258
Y G +DKRT+EK+E+EA+E + ++ +W LD + ERD+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDK 206
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 198
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 84.2 bits (199), Expect = 9e-17
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +2
Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 373
GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 22 GITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +1
Query: 196 MGKGSFKYAWVLDKLKAERDR 258
MGKGSFKYAWVLDKLKAER+R
Sbjct: 1 MGKGSFKYAWVLDKLKAERER 21
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = +2
Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
GI++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 64 GISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 308 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 403
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 302 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +1
Query: 7 ELGYYTQFVIRD*PEMGKEKTHINIVVIGHVDSGKSTTTGHLIY 138
E+ + ++R P+ ++ T I + V+G+V+SGKST G L Y
Sbjct: 92 EMRKVVEVLVRQVPD-DQQFTDIRMAVLGNVESGKSTLLGVLTY 134
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 245 LSVIGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 397
L+ I I + +F+ + IID PGH F G+S D A+L+V
Sbjct: 659 LNAIRIQTKMVKEEFDIKIPGLLIIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +2
Query: 317 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 496
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 497 VGVNK 511
+ NK
Sbjct: 123 ILQNK 127
>SB_33453| Best HMM Match : BRF1 (HMM E-Value=1.4)
Length = 412
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 493 HRRSKQMDSTEPPYSEPRFEEIKKEVSSYIKKIGLQPSCCRFRAHFWDGTE 645
H+RSK T+P R + KK+ S++I + +P+ +H+ D E
Sbjct: 149 HKRSKSSSETDPSSHSKRQKHKKKKSSAHIDESDEEPNDIHPLSHYVDNKE 199
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 174
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_34097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = -1
Query: 430 DTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCDTDH 251
D+ +F + S E S + G C+ +L + + +I + EL +++CDTD
Sbjct: 5 DSDSDFQQSDSDSEGSCVEDSGLCNAML-VVGPRGAGKTASIYACAGELGYKDVECDTDA 63
Query: 250 AQPLV 236
+Q +V
Sbjct: 64 SQGVV 68
>SB_26205| Best HMM Match : Interferon (HMM E-Value=3.4)
Length = 464
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 538 EPRFEEIKKEVSSYIKKIGLQPSCCRFRAHFWD-GTETTCWEP 663
+PR + +++ Y+K + QP F A W G CW+P
Sbjct: 28 KPRERKALQQIKHYLKHVFGQPYDVNFYAGDWMLGPNLFCWQP 70
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 7 ELGYYTQFVIRD*PEMGKEKTHINIVVIGHVDSGKSTTTGHLIY 138
ELG ++++R + + + + V+G+VD+GKST G L +
Sbjct: 209 ELGTVGEYLVRVRMDEN-DFMEVRVAVVGNVDAGKSTLLGVLTH 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,898,532
Number of Sequences: 59808
Number of extensions: 464770
Number of successful extensions: 1250
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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