BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060448.seq
(672 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 62 4e-12
L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein pro... 61 1e-11
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 55 7e-10
L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein pro... 43 3e-06
AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc fi... 41 9e-06
AB208107-1|BAE72139.1| 71|Apis mellifera Broad complex zinc fi... 38 7e-05
AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc fi... 38 9e-05
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 31 0.008
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 23 3.5
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 62.5 bits (145), Expect = 4e-12
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = +2
Query: 212 FTVASKGTHGY-TH-GKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQN 385
F V ++ T Y TH G++ ++CEYC KS+ ++L H R HT +R Y+C VC +AF +
Sbjct: 101 FAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEHS 160
Query: 386 ASLKSHIKSHHPE 424
L H++ H E
Sbjct: 161 GKLHRHMRIHTGE 173
Score = 56.8 bits (131), Expect = 2e-10
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +2
Query: 236 HGYTHGK-RNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKS 412
H H K R ++C+ CE+++ L H+R HT +R ++C VC + FIQ+ L H+++
Sbjct: 138 HRRIHTKERPYKCDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRT 197
Query: 413 HHPE 424
H E
Sbjct: 198 HTGE 201
Score = 56.8 bits (131), Expect = 2e-10
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +2
Query: 236 HGYTH-GKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKS 412
H TH G++ + C+ C K + K L+ H RTHT ++ Y C +CG++F N LK H +
Sbjct: 194 HMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVA 253
Query: 413 HHPE 424
H+ E
Sbjct: 254 HYGE 257
Score = 56.0 bits (129), Expect = 3e-10
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = +2
Query: 251 GKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKSHHPE-- 424
G+R +C C K++ + L H+RTHT ++ Y C CG+ F + LK H ++H E
Sbjct: 172 GERPHKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKP 231
Query: 425 --CDIEGCYF*Y 454
CDI G F Y
Sbjct: 232 YTCDICGKSFGY 243
Score = 53.6 bits (123), Expect = 2e-09
Identities = 27/82 (32%), Positives = 41/82 (50%)
Frame = +3
Query: 9 RCPRCDECFMSYALKNKHLTEAHGQKRTYPCNLCDKVYNRQKTLTEHQRRNHQKVLKHQC 188
RC C + F A +H G+K Y C C K ++ ++ L+ H RR H K ++C
Sbjct: 93 RCNICGKTFAVPARLTRHYRTHTGEK-PYQCEYCSKSFSVKENLSVH-RRIHTKERPYKC 150
Query: 189 EYCDQRFYLPSRLKEHMATHTG 254
+ C++ F +L HM HTG
Sbjct: 151 DVCERAFEHSGKLHRHMRIHTG 172
Score = 51.6 bits (118), Expect = 7e-09
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +3
Query: 6 ERCPRCDECFMSYALKNKHLTEA--HGQKRTYPCNLCDKVYNRQKTLTEHQRRNHQKVLK 179
E+ +C+ C S+++K H ++R Y C++C++ + L H R H
Sbjct: 117 EKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRHMRI-HTGERP 175
Query: 180 HQCEYCDQRFYLPSRLKEHMATHTG 254
H+C C + F +L HM THTG
Sbjct: 176 HKCTVCSKTFIQSGQLVIHMRTHTG 200
Score = 49.6 bits (113), Expect = 3e-08
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +3
Query: 81 QKRTYPCNLCDKVYNRQKTLTEHQRRNHQKVLK--HQCEYCDQRFYLPSRLKEHMATHTG 254
+++TY C LC K ++ QK L + R+H K + ++C C + F +P+RL H THTG
Sbjct: 58 EEKTYQCLLCQKAFD-QKNLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTHTG 116
Score = 48.8 bits (111), Expect = 5e-08
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Frame = +2
Query: 233 THGYTHGKRN---FRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSH 403
+H +HGK +RC C K++ L H RTHT ++ Y+C C ++F +L H
Sbjct: 79 SHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVH 138
Query: 404 IKSHHPE----CDI 433
+ H E CD+
Sbjct: 139 RRIHTKERPYKCDV 152
Score = 48.4 bits (110), Expect = 6e-08
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Frame = +2
Query: 254 KRNFRCEYCEKSYPRLKSLQYHIRTHTNDRR--YRCHVCGQAFIQNASLKSHIKSHHPEC 427
++ ++C C+K++ + Q H+R+H + YRC++CG+ F A L H ++H E
Sbjct: 59 EKTYQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTHTGEK 118
Query: 428 DIEGCYF*YAFINFRDLVKKVYRAVHAPTIEYWRKVTCGRDPQQYSSQR*KTIVYHTYGG 607
+ Y +F +L V+R +H Y V C R ++S + + + HT G
Sbjct: 119 PYQCEYCSKSFSVKENL--SVHRRIHTKERPYKCDV-CER-AFEHSGKLHRHMRIHT--G 172
Query: 608 *R*ATVIXYEKAFVENDQL 664
R K F+++ QL
Sbjct: 173 ERPHKCTVCSKTFIQSGQL 191
Score = 46.8 bits (106), Expect = 2e-07
Identities = 23/82 (28%), Positives = 37/82 (45%)
Frame = +3
Query: 9 RCPRCDECFMSYALKNKHLTEAHGQKRTYPCNLCDKVYNRQKTLTEHQRRNHQKVLKHQC 188
+C C+ F ++H+ H +R + C +C K + + L H R H + C
Sbjct: 149 KCDVCERAFEHSGKLHRHM-RIHTGERPHKCTVCSKTFIQSGQLVIHMR-THTGEKPYVC 206
Query: 189 EYCDQRFYLPSRLKEHMATHTG 254
+ C + F +LK H THTG
Sbjct: 207 KACGKGFTCSKQLKVHTRTHTG 228
Score = 45.2 bits (102), Expect = 6e-07
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 236 HGYTH-GKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKS 412
H TH G++ + C+ C KS+ L+ H H ++ Y+C +C + F +++ HIK+
Sbjct: 222 HTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKT 281
Query: 413 H 415
H
Sbjct: 282 H 282
Score = 38.7 bits (86), Expect = 5e-05
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 12 CPRCDECFMSYALKNKHLTEAHGQKRTYPCNLCDKVYNRQKTLTEHQRRNH-QKVLKHQC 188
C C + F H T H ++ Y C++C K + L HQ ++ +KV K C
Sbjct: 206 CKACGKGFTCSKQLKVH-TRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYK--C 262
Query: 189 EYCDQRFYLPSRLKEHMATHTGRGI 263
C + F ++ H+ TH+ +
Sbjct: 263 TLCHETFGSKKTMELHIKTHSDSSV 287
Score = 31.9 bits (69), Expect = 0.006
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 326 THTNDRRYRCHVCGQAFIQNASLKSHIKSHHPE 424
T+ ++ Y+C +C +AF Q +SH++SH E
Sbjct: 55 TNIEEKTYQCLLCQKAFDQKNLYQSHLRSHGKE 87
Score = 31.1 bits (67), Expect = 0.010
Identities = 8/30 (26%), Positives = 22/30 (73%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTN 337
+G++ ++C C +++ K+++ HI+TH++
Sbjct: 255 YGEKVYKCTLCHETFGSKKTMELHIKTHSD 284
>L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein
protein.
Length = 81
Score = 60.9 bits (141), Expect = 1e-11
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = +2
Query: 254 KRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKSHHPE 424
K++F C+YCEK Y L +L+ HIRTHT +CH+CG+AF + L+ HI++H E
Sbjct: 14 KKSFSCKYCEKVYVSLGALKMHIRTHT--LPCKCHLCGKAFSRPWLLQGHIRTHTGE 68
Score = 44.0 bits (99), Expect = 1e-06
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 60 HLTEAHGQ-KRTYPCNLCDKVYNRQKTLTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEH 236
H A GQ K+++ C C+KVY L H R + L +C C + F P L+ H
Sbjct: 5 HCAAAEGQAKKSFSCKYCEKVYVSLGALKMHIRTH---TLPCKCHLCGKAFSRPWLLQGH 61
Query: 237 MATHTG 254
+ THTG
Sbjct: 62 IRTHTG 67
Score = 41.5 bits (93), Expect = 7e-06
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 266 RCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAF 376
+C C K++ R LQ HIRTHT ++ + C C +AF
Sbjct: 44 KCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAF 80
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 54.8 bits (126), Expect = 7e-10
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 245 TH-GKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKSHHP 421
TH G++ F C C K + R L+ H+R HT ++ Y C C + F+Q A+L+ H++ H
Sbjct: 3 THTGEKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTG 62
Query: 422 E 424
E
Sbjct: 63 E 63
Score = 45.2 bits (102), Expect = 6e-07
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +2
Query: 233 THGYTH-GKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVC 364
TH H G++ + C +C++ + ++ +L+ H+R HT +R Y C +C
Sbjct: 27 THMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYACELC 71
Score = 42.3 bits (95), Expect = 4e-06
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 75 HGQKRTYPCNLCDKVYNRQKTLTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMATHTG 254
H ++ + C C K + R L H R H + C +CD++F + L+ H+ HTG
Sbjct: 4 HTGEKPFECPECHKRFTRDHHLKTHMRL-HTGEKPYHCSHCDRQFVQVANLRRHLRVHTG 62
Score = 33.1 bits (72), Expect = 0.002
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 323 RTHTNDRRYRCHVCGQAFIQNASLKSHIKSHHPE 424
RTHT ++ + C C + F ++ LK+H++ H E
Sbjct: 2 RTHTGEKPFECPECHKRFTRDHHLKTHMRLHTGE 35
Score = 30.3 bits (65), Expect = 0.017
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 12 CPRCDECFMSYALKNKHLTEAHGQKRTYPCNLC 110
C CD F+ A +HL H +R Y C LC
Sbjct: 40 CSHCDRQFVQVANLRRHL-RVHTGERPYACELC 71
Score = 29.9 bits (64), Expect = 0.023
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 156 RNHQKVLKHQCEYCDQRFYLPSRLKEHMATHTG 254
R H +C C +RF LK HM HTG
Sbjct: 2 RTHTGEKPFECPECHKRFTRDHHLKTHMRLHTG 34
>L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein
protein.
Length = 69
Score = 42.7 bits (96), Expect = 3e-06
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 251 GKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKSH 415
G + F+CE C S L H+++H+N +YRC C A SLK H++ +
Sbjct: 13 GSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKLHLRKY 67
Score = 40.7 bits (91), Expect = 1e-05
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 308 LQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKSH 415
L+YH+R H + ++C C + + + L SH+KSH
Sbjct: 4 LEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSH 39
Score = 25.0 bits (52), Expect = 0.66
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 144 EHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMATHT 251
E+ RNH +CE C S L H+ +H+
Sbjct: 5 EYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHS 40
>AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc
finger domain-Z3 isoform protein.
Length = 92
Score = 41.1 bits (92), Expect = 9e-06
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 6 ERCPRCDECFMSYALKNKHLTEAHGQKRT-YPCNLCDKVYNRQKTLTEHQRRNHQ 167
+ CP C F Y +H + H Q T Y C C++ Y + +LT H+ H+
Sbjct: 6 QECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHR 60
Score = 27.9 bits (59), Expect = 0.093
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 99 CNLCDKVYNRQKTLTEH-QRRNHQKVLKHQCEYCDQRFYLPSRLKEHMA-THTG 254
C C + ++ +L H Q ++ Q + CE+C++R+ + L H + H G
Sbjct: 8 CPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRG 61
>AB208107-1|BAE72139.1| 71|Apis mellifera Broad complex zinc
finger domain-Z2 isoform protein.
Length = 71
Score = 38.3 bits (85), Expect = 7e-05
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 254 KRNFRCEYCEKSYPRLKSLQYHIRTHTNDRR--YRCHVCGQAFIQNASLKSHIKSHH 418
K+ F C+ C K SL+ H+ +R+ YRC +C + + SL +HI ++H
Sbjct: 3 KKLFTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYH 59
Score = 33.9 bits (74), Expect = 0.001
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 12 CPRCDECFMSYALKNKHLTEAHGQKRT-YPCNLCDKVYNRQKTLTEHQRRNHQ 167
C C + S A +H+ + H +++ Y C +C++VY + +L H H+
Sbjct: 8 CQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHK 60
Score = 31.5 bits (68), Expect = 0.008
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 84 KRTYPCNLCDKVYNRQKTLTEHQRRNH-QKVLKHQCEYCDQRFYLPSRLKEHMATH 248
K+ + C LC KV + +L H H ++ +++C C++ + + L H+ T+
Sbjct: 3 KKLFTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTY 58
Score = 29.9 bits (64), Expect = 0.023
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 347 YRCHVCGQAFIQNASLKSHIKSHHPE 424
+ C +CG+ ASLK H+ H E
Sbjct: 6 FTCQLCGKVLCSKASLKRHVADKHAE 31
Score = 27.5 bits (58), Expect = 0.12
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +2
Query: 203 EVLFTVASKGTH-GYTHGKRN--FRCEYCEKSYPRLKSLQYHIRTHTNDR 343
+VL + AS H H +R +RC CE+ Y SL HI T+ R
Sbjct: 13 KVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHKSR 62
>AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc
finger domain-Z1 isoform protein.
Length = 111
Score = 37.9 bits (84), Expect = 9e-05
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 9 RCPRCDECFMSYALKNKHLTEAHGQKRTYP-CNLCDKVYNRQKTLTEHQRRNHQKVLKHQ 185
RC C++ S +H+ H + P CN+C +VY+ +L H+ H++ K++
Sbjct: 4 RCEPCNKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYHRQHSKNE 63
Score = 35.1 bits (77), Expect = 6e-04
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 263 FRCEYCEKSYPRLKSLQYHIR-THTN-DRRYRCHVCGQAFIQNASLKSHIKSHH 418
FRCE C K L L+ HI+ HT + C++C + + SL++H +H
Sbjct: 3 FRCEPCNKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYH 56
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 31.5 bits (68), Expect = 0.008
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 93 YPCNLCDKVYNRQKTLTEHQRRNH-QKVLKHQCEYCDQRFYLPSRLKEHMATHTGR 257
Y C++C K + + TL H+ + H Q + C C + F + L H + + R
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALCHKVFRTLNSLNNHKSIYHRR 427
Score = 25.4 bits (53), Expect = 0.50
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +2
Query: 347 YRCHVCGQAFIQNASLKSHIKSHH 418
Y C VCG+ +LK H + H
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQH 395
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 22.6 bits (46), Expect = 3.5
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 287 SFRSIHSGNSSSRVCS 240
+F S+H+GN+ +CS
Sbjct: 26 AFDSLHAGNAEKTLCS 41
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,788
Number of Sequences: 438
Number of extensions: 3919
Number of successful extensions: 61
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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