Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060448.seq
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 57 9e-09
At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein ... 39 0.003
At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein ... 38 0.008
At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein ... 37 0.011
At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein ... 37 0.011
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 37 0.014
At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein ... 36 0.019
At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein ... 36 0.025
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ... 36 0.025
At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein ... 36 0.025
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ... 36 0.025
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ... 35 0.043
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 35 0.043
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ... 35 0.057
At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ... 35 0.057
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 34 0.099
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ... 33 0.13
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 33 0.13
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ... 33 0.17
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 33 0.17
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 33 0.17
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ... 33 0.23
At5g40310.1 68418.m04890 exonuclease family protein contains exo... 32 0.30
At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein ... 32 0.30
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 32 0.30
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 32 0.40
At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein ... 32 0.40
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 31 0.53
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 31 0.53
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 31 0.53
At3g07540.1 68416.m00900 formin homology 2 domain-containing pro... 31 0.70
At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein ... 31 0.70
At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein ... 31 0.70
At3g58070.1 68416.m06473 zinc finger (C2H2 type) family protein ... 31 0.92
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ... 31 0.92
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ... 31 0.92
At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein ... 30 1.2
At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein ... 30 1.6
At3g53820.1 68416.m05946 zinc finger (C2H2 type) family protein ... 30 1.6
At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C... 30 1.6
At2g23090.1 68415.m02753 expressed protein 30 1.6
At1g09920.1 68414.m01116 TRAF-type zinc finger-related contains ... 30 1.6
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 30 1.6
At5g43540.1 68418.m05323 zinc finger (C2H2 type) family protein ... 29 2.1
At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein ... 29 2.1
At1g80730.1 68414.m09472 zinc finger (C2H2 type) family protein ... 29 2.1
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ... 29 2.1
At5g27000.1 68418.m03221 kinesin motor protein-related non-conse... 29 2.8
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ... 29 2.8
At1g68360.1 68414.m07808 zinc finger protein-related similar to ... 29 2.8
At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein ... 29 2.8
At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein ... 26 3.5
At5g67450.1 68418.m08504 zinc finger (C2H2 type) protein 1 (AZF1... 29 3.7
At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein ... 29 3.7
At1g27730.1 68414.m03389 zinc finger (C2H2 type) family protein ... 29 3.7
At3g49930.1 68416.m05460 zinc finger (C2H2 type) family protein ... 28 4.9
At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal hydrolase-r... 28 4.9
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ... 28 6.5
At5g25160.1 68418.m02983 zinc finger (C2H2 type) family protein ... 28 6.5
At4g16610.1 68417.m02512 zinc finger (C2H2 type) family protein ... 28 6.5
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 28 6.5
At2g28710.1 68415.m03490 zinc finger (C2H2 type) family protein ... 28 6.5
At1g10480.1 68414.m01180 zinc finger (C2H2 type) family protein ... 28 6.5
At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein ... 28 6.5
At5g14140.1 68418.m01654 zinc finger (C2H2 type) family protein ... 27 8.6
At4g29910.1 68417.m04256 origin recognition complex subunit 5-re... 27 8.6
At3g46070.1 68416.m04985 zinc finger (C2H2 type) family protein ... 27 8.6
At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein ... 27 8.6
At1g66140.1 68414.m07506 zinc finger (C2H2 type) family protein ... 27 8.6
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 57.2 bits (132), Expect = 9e-09
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Frame = +2
Query: 203 EVLFTVASKGTHGYTHGKRNFRC--EYCEKSYPRLKSLQYHIRTHTNDRRYRCHV--CGQ 370
+ F V++ H + HG+R + C E C K + L+ H HT +R Y C CG+
Sbjct: 88 KTFFDVSALRKHSHIHGERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYICTYEGCGK 147
Query: 371 AFIQNASLKSHIKSHHPE----CDIEGCYF*YA 457
AF + +L+SH+K+H E C GC YA
Sbjct: 148 AFSLDFNLRSHMKTHSQENYHICPYSGCVKRYA 180
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +3
Query: 21 CDECFMSYALKNKHLTEAHGQKRTYPCNL--CDKVYNRQKTLTEHQRRNHQKVLKHQCEY 194
C + F + KH + HG+ R Y C+ C K + L H H + C Y
Sbjct: 86 CGKTFFDVSALRKH-SHIHGE-RQYVCDQEGCGKKFLDSSKLKRHYLI-HTGERNYICTY 142
Query: 195 --CDQRFYLPSRLKEHMATHT 251
C + F L L+ HM TH+
Sbjct: 143 EGCGKAFSLDFNLRSHMKTHS 163
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 332 TNDRRYRCHV--CGQAFIQNASLKSHIKSHHP 421
++DR Y C C +A+I LK H+K HP
Sbjct: 225 SSDRPYACPYEGCEKAYIHEYKLKLHLKREHP 256
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 108 CDKVYNRQKTLTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMATHTG 254
C K + L +H + ++ E C ++F S+LK H HTG
Sbjct: 86 CGKTFFDVSALRKHSHIHGERQYVCDQEGCGKKFLDSSKLKRHYLIHTG 134
>At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 361
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +2
Query: 251 GKRN-FRCEYCEKSYPRLKSLQYHIRTHTND 340
GK N F C+YC K++P K+L HIR HTN+
Sbjct: 4 GKENSFLCKYCYKTFPSGKALGGHIRIHTNE 34
>At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 254 KRNFRCEYCEKSYPRLKSLQYHIRTHTND 340
+R F C++C K +P KSL HIRTH N+
Sbjct: 6 ERKFVCKFCSKRFPCGKSLGGHIRTHMNE 34
>At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 503
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSH 403
HG++ ++CE C K Y + H +T R Y+C CG F + S +H
Sbjct: 154 HGEKKWKCEKCSKKYAVQSDWKAHAKT-CGTREYKCD-CGTLFSRKDSFITH 203
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 263 FRCEYCEKSYPRLKSLQYHIRTH 331
F CE C K + R ++LQ H R H
Sbjct: 82 FVCEICNKGFQRDQNLQLHRRGH 104
>At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein
contains Zinc finger,C2H2 type,domain contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 506
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSH 403
HG++ ++CE C K Y + H +T R YRC CG F + S +H
Sbjct: 141 HGEKKWKCEKCAKRYAVQSDWKAHSKT-CGTREYRCD-CGTIFSRRDSFITH 190
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +2
Query: 293 PRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKSHH 418
P + + +T R+ C +CG+ F ++ +L+ H + H+
Sbjct: 52 PEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHN 93
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 263 FRCEYCEKSYPRLKSLQYHIRTH 331
F CE C K + R ++LQ H R H
Sbjct: 70 FLCEICGKGFQRDQNLQLHRRGH 92
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 36.7 bits (81), Expect = 0.014
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Frame = +2
Query: 245 THGKRNFRC--EYCEKSYPRLKSLQYHIRTHTNDRRYRC--HVCGQAFIQNASLKSHIKS 412
TH KRN RC E C K + K L H R H ++R + C C F + H++
Sbjct: 1234 TH-KRN-RCTHEGCGKKFRAHKYLVLHQRVHKDERPFECSWKGCSMTFKWQWARTEHLRL 1291
Query: 413 HHPE----CDIEGCYF*YAFIN 466
H E C ++GC + F++
Sbjct: 1292 HTGERPYICKVDGCGLSFRFVS 1313
>At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 392
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKSHHPEC 427
HG++ ++C+ C K Y + + H + R +RC CG F S K SH C
Sbjct: 78 HGEKKWKCDKCSKKYAVISDWKAHNKI-CGSREFRCD-CGTLF----SRKDSFISHRSFC 131
Query: 428 DI 433
D+
Sbjct: 132 DV 133
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 263 FRCEYCEKSYPRLKSLQYHIRTH 331
F CE C K + R ++LQ H R H
Sbjct: 6 FFCEICNKGFQREQNLQLHKRGH 28
>At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 466
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSH 403
HG++ + CE C K Y + H +T R YRC CG F + S +H
Sbjct: 137 HGEKKWTCEKCAKRYAVQSDWKAHSKT-CGTREYRCD-CGTIFSRRDSFITH 186
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 344 RYRCHVCGQAFIQNASLKSHIKSHH 418
R+ C VCG+ F ++ +L+ H + H+
Sbjct: 65 RFLCEVCGKGFQRDQNLQLHRRGHN 89
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 263 FRCEYCEKSYPRLKSLQYHIRTH 331
F CE C K + R ++LQ H R H
Sbjct: 66 FLCEVCGKGFQRDQNLQLHRRGH 88
>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
similar to finger protein pcp1 GB:S48856 from [Solanum
tuberosum] contains Pfam domain, PF00096: Zinc finger,
C2H2 type
Length = 513
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSH 403
HG++ ++C+ C K Y + H +T + YRC CG F + S +H
Sbjct: 171 HGEKKWKCDKCSKKYAVQSDCKAHSKT-CGTKEYRCD-CGTLFSRRDSFITH 220
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 263 FRCEYCEKSYPRLKSLQYHIRTH 331
F CE C K + R ++LQ H R H
Sbjct: 99 FVCEICNKGFQRDQNLQLHRRGH 121
>At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 516
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSH 403
HG++ ++CE C K Y + H +T + YRC CG F + S +H
Sbjct: 154 HGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTKEYRCD-CGTIFSRRDSYITH 203
Score = 25.4 bits (53), Expect(2) = 0.91
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 138 LTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMAT 245
+ +H R H + K +CE C +R+ + S K H T
Sbjct: 146 IKKHYYRKHGEK-KWKCEKCSKRYAVQSDWKAHSKT 180
Score = 23.8 bits (49), Expect(2) = 0.91
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 99 CNLCDKVYNRQKTLTEHQRRNH 164
C++C+K + R++ L H RR H
Sbjct: 85 CDVCNKGFQREQNLQLH-RRGH 105
>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSH 403
HG++ ++CE C K Y + H +T + Y+C CG F + S +H
Sbjct: 164 HGEKKWKCEKCSKKYAVQSDWKAHAKT-CGTKEYKCD-CGTLFSRRDSFITH 213
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 263 FRCEYCEKSYPRLKSLQYHIRTH 331
F CE C K + R ++LQ H R H
Sbjct: 92 FICEVCNKGFQRDQNLQLHKRGH 114
>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 602
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSH 403
HG++ ++C+ C K Y + H +T + YRC CG F + S +H
Sbjct: 152 HGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTKEYRCD-CGTLFSRRDSFITH 201
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 263 FRCEYCEKSYPRLKSLQYHIRTH 331
F CE C K + R ++LQ H R H
Sbjct: 81 FICEVCNKGFQREQNLQLHRRGH 103
Score = 24.2 bits (50), Expect(2) = 2.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 138 LTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMAT 245
+ +H R H + K +C+ C +R+ + S K H T
Sbjct: 144 IKKHYYRKHGEK-KWKCDKCSKRYAVQSDWKAHSKT 178
Score = 23.4 bits (48), Expect(2) = 2.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 99 CNLCDKVYNRQKTLTEHQRRNH 164
C +C+K + R++ L H RR H
Sbjct: 83 CEVCNKGFQREQNLQLH-RRGH 103
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 35.1 bits (77), Expect = 0.043
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTND--RRYRCHVCGQAFIQNASLKSHIKS 412
HG + F C C K L +++ RTH + +R+ C VCG F SLK H+K+
Sbjct: 224 HGHKPFSCRLCGK----LLAVKGDWRTHEKNCGKRWVC-VCGSDFKHKRSLKDHVKA 275
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 239 GYTHGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRR 346
G+TH F C C K++ R +LQ H+ H + R
Sbjct: 141 GFTH----FSCHVCFKTFNRYNNLQMHMWGHGSQYR 172
>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 446
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSH 403
HG++ ++C+ C K Y + + H + + YRC CG F + S +H
Sbjct: 140 HGEKKWKCDKCSKKYAVMSDWKAHSKI-CGTKEYRCD-CGTLFSRKDSFITH 189
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 263 FRCEYCEKSYPRLKSLQYHIRTH 331
F CE C K + R ++LQ H R H
Sbjct: 68 FICEVCNKGFKRDQNLQLHRRGH 90
>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
similar to zinc finger protein ID1 GB:AAC18941
GI:3170601 from [Zea mays] contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 467
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSH 403
HG++ ++C+ C K Y + H +T + YRC CG F + S +H
Sbjct: 153 HGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTKEYRCD-CGTIFSRRDSYITH 202
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 263 FRCEYCEKSYPRLKSLQYHIRTH 331
F CE C K + R ++LQ H R H
Sbjct: 82 FLCEVCNKGFQREQNLQLHRRGH 104
Score = 24.2 bits (50), Expect(2) = 2.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 138 LTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMAT 245
+ +H R H + K +C+ C +R+ + S K H T
Sbjct: 145 IKKHYYRKHGEK-KWKCDKCSKRYAVQSDWKAHSKT 179
Score = 23.4 bits (48), Expect(2) = 2.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 99 CNLCDKVYNRQKTLTEHQRRNH 164
C +C+K + R++ L H RR H
Sbjct: 84 CEVCNKGFQREQNLQLH-RRGH 104
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 33.9 bits (74), Expect = 0.099
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTND--RRYRCHVCGQAFIQNASLKSHIKS--- 412
HG R F C C K++ +++ RTH + + + C CG F SLK H+K+
Sbjct: 335 HGVRPFACRRCGKAF----AVKGDWRTHEKNCGKLWYCS-CGSDFKHKRSLKDHVKAFGN 389
Query: 413 -HHPECDIE 436
H P C I+
Sbjct: 390 GHVPCCGID 398
>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
similar to potato PCP1 zinc finger protein, GenBank
accession number X82328 contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 402
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKSHHPEC 427
HG++ ++CE C K Y + H + R YRC CG F S K +H C
Sbjct: 154 HGEKKWKCEKCSKFYAVQSDWKAHTKI-CGTRDYRCD-CGTLF----SRKDTFITHRAFC 207
Query: 428 D 430
D
Sbjct: 208 D 208
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 263 FRCEYCEKSYPRLKSLQYHIRTH 331
F CE C K + R ++LQ H R H
Sbjct: 82 FVCEICNKGFQRDQNLQLHRRGH 104
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 17/79 (21%)
Frame = +3
Query: 66 TEAHGQKRTYPCNLCDKVYNRQKTLTEHQRRNHQKVLK-----------------HQCEY 194
T A R Y C C ++ +T+H + +HQ L+ H C+
Sbjct: 11 TSAKKDIRNYLCQYCGISRSKNYLITKHIQSHHQMELEEERDDEACEVDEESSSNHTCQE 70
Query: 195 CDQRFYLPSRLKEHMATHT 251
C F P+ LK+HM +H+
Sbjct: 71 CGAEFKKPAHLKQHMQSHS 89
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 22/84 (26%)
Frame = +2
Query: 257 RNFRCEYC----EKSYPRLKSLQYHIRTHTNDRR--------------YRCHVCGQAFIQ 382
RN+ C+YC K+Y K +Q H + + R + C CG F +
Sbjct: 18 RNYLCQYCGISRSKNYLITKHIQSHHQMELEEERDDEACEVDEESSSNHTCQECGAEFKK 77
Query: 383 NASLKSHIKSHHPE----CDIEGC 442
A LK H++SH E C ++ C
Sbjct: 78 PAHLKQHMQSHSLERSFTCYVDDC 101
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +3
Query: 12 CPRCDECFMSYALKNKHLTEAHGQKRTYPCNL--CDKVYNRQKTLTEHQRRNHQKVLKHQ 185
C C F A +H+ ++H +R++ C + C Y R+ L H + K+ K
Sbjct: 68 CQECGAEFKKPAHLKQHM-QSHSLERSFTCYVDDCAASYRRKDHLNRHLLTHKGKLFKCP 126
Query: 186 CEYCDQRFYLPSRLKEHM 239
E C F + + H+
Sbjct: 127 KENCKSEFSVQGNVGRHV 144
>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 500
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSH 403
HG++ ++CE C K Y + H + + Y+C CG F + S +H
Sbjct: 132 HGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTKEYKCD-CGTLFSRRDSFITH 181
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 263 FRCEYCEKSYPRLKSLQYHIRTH 331
F CE C K + R ++LQ H R H
Sbjct: 61 FVCEICNKGFQRDQNLQLHRRGH 83
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTND--RRYRCHVCGQAFIQNASLKSHIKSH-- 415
HG + F C C K++ +++ RTH + + + C CG F SLK H+K+
Sbjct: 257 HGSKPFACRMCGKAF----AVKGDWRTHEKNCGKLWYCS-CGSDFKHKRSLKDHVKAFGN 311
Query: 416 -HPECDIE 436
H C I+
Sbjct: 312 GHVPCGID 319
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 33.1 bits (72), Expect = 0.17
Identities = 23/60 (38%), Positives = 29/60 (48%)
Frame = +3
Query: 111 DKVYNRQKTLTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMATHTGRGISAVNTAKRA 290
D V T+ RRN K QC YC + FY P +L H+ G SAV TAK++
Sbjct: 242 DFVLTTYSTVESEYRRNIMPS-KVQCAYCSKSFY-PKKLVIHLRYFCGP--SAVKTAKQS 297
>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
contains Pfam domian PF00096: Zinc finger, C2H2 type
Length = 302
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +2
Query: 248 HGKRNFRC-EYCEKSYPRLKSLQYHIRTHTND--RRYRCHVCGQAFIQNASLKSHIKS 412
HG + FRC + CEK++ +++ RTH + + + C VCG F SLK H+++
Sbjct: 181 HGAKPFRCRKKCEKTF----AVRGDWRTHEKNCGKLWFC-VCGSDFKHKRSLKDHVRA 233
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +2
Query: 251 GKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKSHHPECD 430
G F C C K++ R ++Q H+ H + +YR G ++ S I C
Sbjct: 97 GPTQFSCSVCNKTFNRFNNMQMHMWGHGS--QYR---KGPESLRGTKSSSSILRLPCYCC 151
Query: 431 IEGC 442
EGC
Sbjct: 152 AEGC 155
>At5g40310.1 68418.m04890 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 348
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 99 CNLCDKVYNRQKTLTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHM 239
C C + +N+++ L EH R ++ V + C C++ L+EH+
Sbjct: 8 CGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHL 54
>At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 373
Score = 32.3 bits (70), Expect = 0.30
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = +2
Query: 269 CEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKSHHPECDIEGCYF 448
C+ C K + R +L+ H+R H ++ + R + Q+ +K H+ C GC +
Sbjct: 219 CQICGKGFKRDANLRMHMRAHGDEYKTREALISPT-SQDKKGGYSLKKHYYSCPQHGCRW 277
Query: 449 *YAFINFRDL-----VKKVYRAVHAPTIEYWRK 532
F+ L K Y+ H P + R+
Sbjct: 278 NQRHEKFQPLKSVICAKNHYKRSHCPKMYMCRR 310
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTND--RRYRCHVCGQAFIQNASLKSHIKS 412
HG + F C C K++ +++ RTH + + + C +CG F SLK HIK+
Sbjct: 296 HGIKPFMCRKCGKAF----AVRGDWRTHEKNCGKLWYC-ICGSDFKHKRSLKDHIKA 347
>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 452
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSH 403
HG++ ++C+ C K Y + H + + Y+C CG F + S +H
Sbjct: 134 HGEKKWKCDKCSKKYAVQSDWKAHSKI-CGTKEYKCD-CGTLFSRRDSFITH 183
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 263 FRCEYCEKSYPRLKSLQYHIRTH 331
F CE C K + R ++LQ H R H
Sbjct: 63 FVCEICNKGFQRDQNLQLHRRGH 85
>At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 314
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 344 RYRCHVCGQAFIQNASLKSHIKSHHPECDIEGC 442
RY+C C ++FI +L H++SH E C
Sbjct: 3 RYKCRFCFKSFINGRALGGHMRSHMLTLSAERC 35
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 263 FRCEYCEKSYPRLKSLQYHIRTH-TNDRRYRCHVCGQA 373
++C +C KS+ ++L H+R+H RC + G+A
Sbjct: 4 YKCRFCFKSFINGRALGGHMRSHMLTLSAERCVITGEA 41
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 99 CNLCDKVYNRQKTLTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHM--ATHTGRG-ISA 269
C C K++NR++ L EH + ++ + + +C C + ++EH+ H +G A
Sbjct: 19 CVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHLSKGNCKA 78
Query: 270 VNTAKRAT 293
+ T + T
Sbjct: 79 IFTKRGCT 86
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 99 CNLCDKVYNRQKTLTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHM--ATHTGRG-ISA 269
C C K++NR++ L EH + ++ + + +C C + ++EH+ H +G A
Sbjct: 19 CVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHLSKGNCKA 78
Query: 270 VNTAKRAT 293
+ T + T
Sbjct: 79 IFTKRGCT 86
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +3
Query: 99 CNLCDKVYNRQKTLTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMATHTGRGISAVNT 278
C CD+ ++ +K L +HQ+ H K C C ++ S + H+ ++ V
Sbjct: 14 CYYCDREFDDEKILVQHQKAKHFK-----CHVCHKKLSTASGMVIHVLQVHKENVTKVPN 68
Query: 279 AK 284
AK
Sbjct: 69 AK 70
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 269 CEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKSHHPE 424
C YC++ + K L H + + ++CHVC + + + H+ H E
Sbjct: 14 CYYCDREFDDEKILVQHQKA----KHFKCHVCHKKLSTASGMVIHVLQVHKE 61
>At3g07540.1 68416.m00900 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 841
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = +3
Query: 420 PNAI*RDAIFNTLSLTSEIWLRKYTVRSMPPRSNTGEKSHVVAILSSTAVNDEKQ*CTIL 599
P+A R ++++++S T + + RK + S PPR N ++ LSST+ + + C +
Sbjct: 337 PDAYARSSMYSSVSTTPDRFFRK-VLDSSPPRWNDFSRNVKSLFLSSTSASPARDFCINI 395
Query: 600 ME 605
E
Sbjct: 396 SE 397
>At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 257
Score = 31.1 bits (67), Expect = 0.70
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRY 349
+ R F C YC +++P ++L H H +R++
Sbjct: 90 NNNRRFECHYCFRNFPTSQALGGHQNAHKRERQH 123
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 323 RTHTNDRRYRCHVCGQAFIQNASLKSHIKSHHPE 424
+ + N+RR+ CH C + F + +L H +H E
Sbjct: 87 KDNNNNRRFECHYCFRNFPTSQALGGHQNAHKRE 120
>At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 907
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Frame = +2
Query: 263 FRCEYCEKSYPRLKSLQYHI--RTHTNDRR----YRCHVCGQAFIQNASLKSHIKSHHP- 421
F C C S+ R K L+ H+ R H +C CG F L H+++ HP
Sbjct: 496 FACAICLDSFVRRKLLEIHVEERHHVQFAEKCMLLQCIPCGSHFGDKEQLLVHVQAVHPS 555
Query: 422 EC 427
EC
Sbjct: 556 EC 557
>At3g58070.1 68416.m06473 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 253
Score = 30.7 bits (66), Expect = 0.92
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 224 SKGTHGYTHGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRR 346
S + +H +R F C YC +++P ++L H H +R+
Sbjct: 79 STDNNSISHNRR-FECHYCFRNFPTSQALGGHQNAHKRERQ 118
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 332 TNDRRYRCHVCGQAFIQNASLKSHIKSHHPE 424
+++RR+ CH C + F + +L H +H E
Sbjct: 86 SHNRRFECHYCFRNFPTSQALGGHQNAHKRE 116
>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type, domain
Length = 745
Score = 30.7 bits (66), Expect = 0.92
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Frame = +2
Query: 269 CEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVC-----GQ-AFIQN-ASLKSHIKSHHPEC 427
CE+C++ + L TH + Y CH+C GQ + N L+ H +S H C
Sbjct: 200 CEFCKRPFYGDNELY----THMSREHYTCHICQRLKPGQYEYYGNYDDLEVHFRSDHFLC 255
Query: 428 DIEGCYF*YAFINFR-DLVKKVYRAVHAPTIEYWRKVTCGRDP 553
+ E C FI F+ + K+ + P R+ + R+P
Sbjct: 256 EDETCLA-KKFIVFQIEAELKIQASFQYPNSRRGRRRSSLREP 297
>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
(ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
type
Length = 178
Score = 30.7 bits (66), Expect = 0.92
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Frame = +2
Query: 236 HGYTHGKRNFRCEYCEKSYPRLKSLQYHIRTH---------------TNDRR----YRCH 358
H +H F C+ C K + ++L H +H +ND + ++C
Sbjct: 38 HTESHTSNQFECKTCNKRFSSFQALGGHRASHKKPKLTVEQKDVKHLSNDYKGNHFHKCS 97
Query: 359 VCGQAFIQNASLKSHIKSHHPECDIE 436
+C Q+F +L H++ H +E
Sbjct: 98 ICSQSFGTGQALGGHMRRHRSSMTVE 123
>At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 191
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +2
Query: 254 KRNFRCEYCEKSYPRLKSLQYHIRTHTNDR----RYRCHVCGQAF 376
++ F+C YC +++P ++L H H +R R+ H AF
Sbjct: 52 EKRFKCHYCFRNFPTSQALGGHQNAHKRERQQTKRFNLHSNAAAF 96
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 320 IRTHTNDRRYRCHVCGQAFIQNASLKSHIKSHHPE 424
I+ ++R++CH C + F + +L H +H E
Sbjct: 46 IKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHKRE 80
>At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 288
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 347 YRCHVCGQAFIQNASLKSHIKSH 415
Y+C VC ++F+ +L H++SH
Sbjct: 4 YKCRVCFKSFVNGKALGGHMRSH 26
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 320 IRTHTNDRRYRCHVCGQAFIQNASLKSHIKSH 415
I T RY+C CG+ F +L H SH
Sbjct: 164 INRATTKGRYKCETCGKVFKSYQALGGHRASH 195
>At3g53820.1 68416.m05946 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 142
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 257 RNFRCEYCEKSYPRLKSLQYHIRTHTNDR 343
R + CE+CE+ + ++L H+ H DR
Sbjct: 19 RPYICEFCERGFSNAQALGGHMNIHRKDR 47
>At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C2H2
type) family protein identical to superman protein
GB:S60325 from [Arabidopsis thaliana]; contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 204
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 239 GYTHGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDR 343
G++ R++ C +C++ + ++L H+ H DR
Sbjct: 39 GFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDR 73
>At2g23090.1 68415.m02753 expressed protein
Length = 78
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +2
Query: 350 RCHVCGQAFIQNAS---LKSHIKSHHPECDIEGCY 445
+C VC Q FI S + H ++ HP+ D+ C+
Sbjct: 39 QCKVCMQTFICTTSEVKCREHAEAKHPKADVVACF 73
>At1g09920.1 68414.m01116 TRAF-type zinc finger-related contains
Pfam PF02176: TRAF-type zinc finger; similar to TNF
receptor associated factor 4 (GI:7274404) [Mus musculus]
(GI:7274404); similar to Cysteine rich motif Associated
to Ring and Traf domains protein (mCART1)(GI:1041446)
[Mus musculus]
Length = 192
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +2
Query: 251 GKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKSHHP 421
G+ C +C++ P L ++ H R H +C +CG + + + ++ +H P
Sbjct: 6 GEITIVCNHCDRDIPSL-NIDLH-RVHCARNLEKCKICGDMVPKKHAEEHYLNTHAP 60
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 248 HGKRNFRCEYCEKSYPRLKSLQYHIRTHTND--RRYRCHVCGQAFIQNASLKSHIKS 412
HG + F C C K+ +++ RTH + + + C CG F SLK HI+S
Sbjct: 260 HGSKPFSCGKCGKAL----AVKGDWRTHEKNCGKLWYC-TCGSDFKHKRSLKDHIRS 311
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 251 GKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRR 346
G F C C K++ R ++Q H+ H ++ R
Sbjct: 176 GPMQFACSICSKTFNRYNNMQMHMWGHGSEFR 207
>At5g43540.1 68418.m05323 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 137
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/62 (22%), Positives = 28/62 (45%)
Frame = +2
Query: 254 KRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKSHHPECDI 433
+R + C +C++ + ++L H+ H DR + V A + +L + H D+
Sbjct: 32 RRMYECTFCKRGFTNAQALGGHMNIHRRDRLNKAKVQNDA---DVALSQTHRCFHVASDL 88
Query: 434 EG 439
G
Sbjct: 89 GG 90
>At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 650
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +2
Query: 290 YPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKSH 415
YPR LQ R ++ Y C VCG+ F L H K H
Sbjct: 81 YPRKSKLQK--RPESSSSCYECKVCGKIFGCYRGLGGHTKLH 120
>At1g80730.1 68414.m09472 zinc finger (C2H2 type) family protein
(ZFP1) identical to zinc finger protein, ZFP1
gi|790673|gb|AAA87297; contains zinc finger, C2H2 type,
domain, Prosite:PS00028
Length = 228
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Frame = +3
Query: 72 AHGQKRTYPCNLCDKVYNRQKTLTEHQRRNHQKVLKH--QCEYCDQRFYLPSRLKEHMAT 245
+ G + NL D + + HQ + Q C YC ++FY L H
Sbjct: 30 SRGTATSSELNLIDSFKTSSSSTSHHQHQQEQLADPRVFSCNYCQRKFYSSQALGGHQNA 89
Query: 246 H 248
H
Sbjct: 90 H 90
>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 419
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 293 PRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKSHIKSH 415
P + + RT RY C +C Q F ++ +L+ H + H
Sbjct: 52 PEAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRH 92
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 138 LTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMATHTGRGIS 266
+ +H RR H + CE C + + + S K H+ T RG S
Sbjct: 134 IKKHFRRKHSNHKQWICERCSKGYAVQSDYKAHLKTCGTRGHS 176
Score = 27.5 bits (58), Expect = 8.6
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +2
Query: 323 RTHTNDRRYRCHVCGQAFIQNASLKSHIKS 412
R H+N +++ C C + + + K+H+K+
Sbjct: 140 RKHSNHKQWICERCSKGYAVQSDYKAHLKT 169
>At5g27000.1 68418.m03221 kinesin motor protein-related
non-consensus AT donor splice site at exon 12;
non-consensus AC acceptor splice site at exon 13
Length = 987
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = +1
Query: 274 ILRKELPEVKVAAVSHKDAHKRPSVPVPR--------VRSGLYTERESEVAHKESPPRM 426
+L K + EV+ H + K S P+P VRS L R+ E A + SPP++
Sbjct: 248 VLNKVMEEVQQRLSIHNEMMKSSSKPIPEDDSSCETVVRSQLCDARQHEEAEENSPPQV 306
>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 439
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 323 RTHTNDRRYRCHVCGQAFIQNASLKSHIKSH 415
RT RY C +C Q F ++ +L+ H + H
Sbjct: 59 RTLLESDRYICEICNQGFQRDQNLQMHRRRH 89
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 138 LTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMATHTGRGIS 266
+ +H RR H + CE C + + + S K H+ T RG S
Sbjct: 131 IKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHS 173
Score = 27.5 bits (58), Expect = 8.6
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +2
Query: 323 RTHTNDRRYRCHVCGQAFIQNASLKSHIKS 412
R H+N +++ C C + + + K+H+K+
Sbjct: 137 RKHSNHKQWVCERCSKGYAVQSDYKAHLKT 166
>At1g68360.1 68414.m07808 zinc finger protein-related similar to
zinc finger protein GI:790683 from [Arabidopsis
thaliana]
Length = 244
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 218 VASKGTHGYTHGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRR 346
V S+G G G+R + C+YC + + ++L H H +R+
Sbjct: 59 VRSRGGGG-GGGERKYECQYCCREFGNSQALGGHQNAHKKERQ 100
>At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 362
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 323 RTHTNDRRYRCHVCGQAFIQNASLKSHIKSH 415
RT RY C +C Q F ++ +L+ H + H
Sbjct: 31 RTLLESDRYVCEICNQGFQRDQNLQMHRRRH 61
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 138 LTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMATHTGRGIS 266
+ +H RR H + CE C + + + S K H+ T RG S
Sbjct: 104 IKKHFRRKHSVHKQWVCERCSKGYAVQSDYKAHLKTCGSRGHS 146
>At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 270
Score = 25.8 bits (54), Expect(2) = 3.5
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = +2
Query: 347 YRCHVCGQAFIQNASLKSHIKSH 415
+RC++C + F +L H++ H
Sbjct: 211 HRCNICSRVFSSGQALGGHMRCH 233
Score = 21.4 bits (43), Expect(2) = 3.5
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 254 KRNFRCEYCEKSYPRLKSLQYHIRTH 331
+ F C+ C+K + ++L H TH
Sbjct: 145 EERFECDGCKKVFGSHQALGGHRATH 170
>At5g67450.1 68418.m08504 zinc finger (C2H2 type) protein 1 (AZF1)
identical to Cys2/His2-type zinc finger protein 1
[Arabidopsis thaliana] gi|6009887|dbj|BAA85108
Length = 245
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 332 TNDRRYRCHVCGQAFIQNASLKSHIKSH 415
++ R Y+C VCG++F +L H SH
Sbjct: 92 SDHRDYKCTVCGKSFSSYQALGGHKTSH 119
>At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 304
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 242 YTHGKRNFRCEYCEKSYPRLKSLQYHIRTHT 334
Y+ K+ C+ C+KS+ K+L H+R HT
Sbjct: 2 YSLLKKTKICQVCKKSFSNGKALGGHMRAHT 32
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 341 RRYRCHVCGQAFIQNASLKSHIKSHH 418
R+Y C +C + F +L H K H+
Sbjct: 272 RQYECQICNRMFASGQALGGHKKIHY 297
>At1g27730.1 68414.m03389 zinc finger (C2H2 type) family protein
(ZAT10) / salt-tolerance zinc finger protein (STZ)
identical to salt-tolerance zinc finger protein
GB:CAA64820 GI:1565227 from [Arabidopsis thaliana];
contains Pfam domain, PF00096: Zinc finger, C2H2 type;
identical to cDNA zinc finger protein STZ/ZAT10
(STZ/ZAT10) GI:9965730
Length = 227
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 30 CFMSYALKNKHLTEAHG-QKRTYPCNLCDKVYNRQKTLTEHQRRNHQKVL 176
C M A N+ +K +Y C++CDK ++ + L H + +H+K L
Sbjct: 58 CLMLLARDNRQPPPPPAVEKLSYKCSVCDKTFSSYQALGGH-KASHRKNL 106
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +2
Query: 215 TVASKGTHGYTHGK-RNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNAS 391
T ++ T T G ++ C C KS+P ++L H R H + + + A
Sbjct: 119 TSSATTTSAVTTGSGKSHVCTICNKSFPSGQALGGHKRCHYEGNN-NINTSSVSNSEGAG 177
Query: 392 LKSHIKSHHPECDI 433
SH+ S H D+
Sbjct: 178 STSHVSSSHRGFDL 191
>At3g49930.1 68416.m05460 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 215
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 335 NDRRYRCHVCGQAFIQNASLKSHIKSHHPECDIE 436
+ + Y+C VCG++F +L H SH ++
Sbjct: 90 HQKDYKCSVCGKSFPSYQALGGHKTSHRKPVSVD 123
>At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF04780:
Protein of unknown function (DUF629), PF04781: Protein
of unknown function (DUF627)
Length = 1106
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 105 LCDKVYNRQKTLTEHQRRNHQKVLKHQCEYCDQR 206
LC Y R++ L E Q ++ +L +CE C R
Sbjct: 559 LCKSEYERRRKLKEDQWNSYASLLCDKCEECFSR 592
>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 695
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 269 CEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVC 364
CE CE+ ++K + RYRC+VC
Sbjct: 576 CEICERKIVKVKERGNVLWNQKEALRYRCNVC 607
>At5g25160.1 68418.m02983 zinc finger (C2H2 type) family protein
(ZFP3) identical to zinc finger protein, ZFP3
gi|790677|gb|AAA87299; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 235
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/53 (26%), Positives = 21/53 (39%)
Frame = +3
Query: 90 TYPCNLCDKVYNRQKTLTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMATH 248
++ NL D + + + E QK+ C YC + FY L H H
Sbjct: 33 SHELNLIDCIDDTTSIVNESTTSTEQKLFS--CNYCQRTFYSSQALGGHQNAH 83
>At4g16610.1 68417.m02512 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 204
Score = 27.9 bits (59), Expect = 6.5
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 344 RYRCHVCGQAFIQNASLKSHIKSH 415
+++C +C ++F +L H+KSH
Sbjct: 4 KHKCKLCSKSFCNGRALGGHMKSH 27
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +2
Query: 257 RNFRCEY--CEKSYPRLKSLQYHIRTHTNDRRYRCHV--CGQAF 376
R +C + C+ ++ S HIR HT R Y C CGQ F
Sbjct: 1288 RPLKCPWKGCKMTFKWAWSRTEHIRVHTGARPYVCAEPDCGQTF 1331
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 278 CEKSYPRLKSLQYHIRTHTNDRRYRC--HVCGQAFIQNASLKSHIKSH 415
C K++ K L H R H++DR +C C F S HI+ H
Sbjct: 1267 CGKNFFSHKYLVQHQRVHSDDRPLKCPWKGCKMTFKWAWSRTEHIRVH 1314
>At2g28710.1 68415.m03490 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 156
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 168 KVLKHQCEYCDQRFYLPSRLKEHMATHTG 254
K +KH+C C F + L HM H G
Sbjct: 74 KPVKHECPICGAEFAVGQALGGHMRKHRG 102
>At1g10480.1 68414.m01180 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 211
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +2
Query: 221 ASKGTHGYTHGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHVCGQAFIQNASLKS 400
+S T T KR+ C+YC K + ++L H H +R + + QA + AS+
Sbjct: 47 SSTNTTSLTVMKRH-ECQYCGKEFANSQALGGHQNAHKKERLKKKRLQLQA--RRASIGY 103
Query: 401 HIKSH 415
++ +H
Sbjct: 104 YLTNH 108
>At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein
identical to C2H2 zinc finger protein ZAT1 [Arabidopsis
thaliana] gi|1418321|emb|CAA67227; contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 267
Score = 27.9 bits (59), Expect = 6.5
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +2
Query: 338 DRRYRCHVCGQAFIQNASLKSHIKSH 415
+ R++C +C ++F +L H++SH
Sbjct: 2 EERHKCKLCWKSFANGRALGGHMRSH 27
>At5g14140.1 68418.m01654 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 427
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +2
Query: 296 RLKSLQYHIRTHTNDRRYR-CHVCGQAFIQNASLKSHIKSHH 418
RLKSL H H N R C VC + + + L HI H
Sbjct: 154 RLKSLD-HFEDHYNARHTASCSVCSRVYPTSRLLSIHISEAH 194
>At4g29910.1 68417.m04256 origin recognition complex subunit
5-related (ORC5) contains weak similarity to Origin
recognition complex subunit 5 (Swiss-Prot:Q9WUV0) [Mus
musculus]
Length = 534
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 209 LFTVASKGTHGYTHGKRNFRCEYCEKSYPRLKSLQYHIRT 328
+F V+S G T G+R + Y ++ L+ L +H+ T
Sbjct: 335 IFRVSSHPHDGETRGERRQKASYSSENREELEILDFHMST 374
>At3g46070.1 68416.m04985 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 170
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 254 KRNFRCEYCEKSYPRLKSLQYHIRTHT 334
KR FRC+ CE+ + ++L H +H+
Sbjct: 33 KRVFRCKTCERDFDSFQALGGHRASHS 59
>At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type,
domain; weak similarity to Zinc finger protein T86
(Swiss-Prot:O00488) [Homo sapiens]
Length = 198
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/53 (22%), Positives = 22/53 (41%)
Frame = +2
Query: 194 LRPEVLFTVASKGTHGYTHGKRNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYR 352
L ++FT K G F C C +++ + YH +T + +R +
Sbjct: 115 LMSNLVFTELRKPETEDLPGMGQFNCLLCHRNFSNASVMDYHFKTKKHKKRVK 167
>At1g66140.1 68414.m07506 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 260
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 254 KRNFRCEYCEKSYPRLKSLQYHIRTHTNDR 343
KR F C YC++ + ++L H H +R
Sbjct: 82 KRVFSCNYCQRKFYSSQALGGHQNAHKRER 111
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,689,977
Number of Sequences: 28952
Number of extensions: 305862
Number of successful extensions: 1303
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -