Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060447.seq
(686 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P63162 Cluster: Small nuclear ribonucleoprotein-associa... 86 7e-16
UniRef50_UPI00015561AA Cluster: PREDICTED: similar to Small nucl... 83 8e-15
UniRef50_Q4TAB6 Cluster: Chromosome undetermined SCAF7390, whole... 82 1e-14
UniRef50_UPI0000DA295F Cluster: PREDICTED: similar to small nucl... 78 2e-13
UniRef50_Q6P0Y5 Cluster: Putative uncharacterized protein; n=1; ... 77 4e-13
UniRef50_Q9FI15 Cluster: Similarity to small nuclear ribonucleop... 73 9e-12
UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babe... 71 4e-11
UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B, puta... 66 8e-10
UniRef50_Q55A45 Cluster: Putative small nuclear ribonucleopartic... 64 4e-09
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot... 60 5e-08
UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2; Plasm... 59 9e-08
UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167, w... 57 5e-07
UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associa... 57 5e-07
UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3; Plasm... 56 6e-07
UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 56 8e-07
UniRef50_A5E144 Cluster: Putative uncharacterized protein; n=1; ... 56 8e-07
UniRef50_Q4P7M4 Cluster: Putative uncharacterized protein; n=1; ... 54 3e-06
UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Re... 54 4e-06
UniRef50_Q59KX5 Cluster: Potential spliceosomal snRNA Sm core bi... 53 8e-06
UniRef50_A3LXX4 Cluster: Predicted protein; n=3; Saccharomycetac... 53 8e-06
UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 52 1e-05
UniRef50_UPI0000499A4F Cluster: small nuclear ribonucleoprotein ... 50 5e-05
UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB, pu... 48 2e-04
UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-... 44 0.005
UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;... 44 0.005
UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4; T... 43 0.006
UniRef50_Q4D159 Cluster: Small nuclear ribonucleoprotein protein... 41 0.025
UniRef50_A7T7F0 Cluster: Predicted protein; n=3; Eumetazoa|Rep: ... 39 0.099
UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core, ... 39 0.13
UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm... 39 0.13
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 39 0.13
UniRef50_A2F7C1 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 38 0.17
UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm... 38 0.30
UniRef50_Q5CLJ8 Cluster: U6 snRNA-associated sm-like protein; n=... 37 0.40
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 37 0.40
UniRef50_Q8N8A9 Cluster: CDNA FLJ39739 fis, clone SMINT2016440; ... 37 0.53
UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 1.2
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 36 1.2
UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11; Saccharomyc... 36 1.2
UniRef50_Q014C2 Cluster: Small Nuclear ribonucleoprotein splicin... 35 1.6
UniRef50_UPI0000513250 Cluster: PREDICTED: similar to CG31950-PA... 35 2.1
UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia... 35 2.1
UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p... 34 2.8
UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, wh... 34 2.8
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm... 34 2.8
UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1; Ae... 34 2.8
UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm... 34 2.8
UniRef50_UPI0000D55DF4 Cluster: PREDICTED: similar to CG31950-PA... 34 3.7
UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm... 34 3.7
UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, wh... 33 4.9
UniRef50_Q0ULJ4 Cluster: Putative uncharacterized protein; n=1; ... 33 4.9
UniRef50_Q8SQH7 Cluster: Probable U6 snRNA-associated Sm-like pr... 33 4.9
UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm... 33 4.9
UniRef50_Q3EZ01 Cluster: Putative uncharacterized protein; n=1; ... 33 6.5
UniRef50_Q0UHH8 Cluster: Predicted protein; n=2; Pezizomycotina|... 33 6.5
UniRef50_A6RWH0 Cluster: Predicted protein; n=10; Pezizomycotina... 33 6.5
UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1; ... 33 8.6
UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis ... 33 8.6
UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, wh... 33 8.6
UniRef50_A5DU89 Cluster: Putative uncharacterized protein; n=1; ... 33 8.6
UniRef50_A5DKA3 Cluster: Putative uncharacterized protein; n=1; ... 33 8.6
UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4; M... 33 8.6
>UniRef50_P63162 Cluster: Small nuclear ribonucleoprotein-associated
protein N; n=94; Eukaryota|Rep: Small nuclear
ribonucleoprotein-associated protein N - Homo sapiens
(Human)
Length = 240
Score = 86.2 bits (204), Expect = 7e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL-Q 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 56.8 bits (131), Expect = 5e-07
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 82
>UniRef50_UPI00015561AA Cluster: PREDICTED: similar to Small nuclear
ribonucleoprotein polypeptide N; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to Small nuclear
ribonucleoprotein polypeptide N - Ornithorhynchus
anatinus
Length = 154
Score = 82.6 bits (195), Expect = 8e-15
Identities = 36/51 (70%), Positives = 43/51 (84%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKL 269
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+
Sbjct: 103 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKI 153
>UniRef50_Q4TAB6 Cluster: Chromosome undetermined SCAF7390, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF7390,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 268
Score = 81.8 bits (193), Expect = 1e-14
Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Frame = +3
Query: 120 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL-QT 296
T+GK++KM QHI++R+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 9 TVGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPER 68
Query: 297 EKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 69 EEKRVLGLVLLRGENL 84
Score = 58.0 bits (134), Expect = 2e-07
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KNSK +REEKR LG VLLRGEN+VS+T+
Sbjct: 54 EFRKIKPKNSKQPEREEKRVLGLVLLRGENLVSMTV 89
>UniRef50_UPI0000DA295F Cluster: PREDICTED: similar to small nuclear
ribonucleoparticle-associated protein; n=1; Rattus
norvegicus|Rep: PREDICTED: similar to small nuclear
ribonucleoparticle-associated protein - Rattus
norvegicus
Length = 195
Score = 78.2 bits (184), Expect = 2e-13
Identities = 38/61 (62%), Positives = 44/61 (72%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQT 296
MT+GK++KM QHI+YR R LQD R FIG FKAFDKHMN IL DC+ K+ K K QT
Sbjct: 1 MTVGKSSKMLQHIDYRTRCFLQDGRIFIGIFKAFDKHMNSILCDCDEFRKIKPKNEK-QT 59
Query: 297 E 299
E
Sbjct: 60 E 60
>UniRef50_Q6P0Y5 Cluster: Putative uncharacterized protein; n=1;
Homo sapiens|Rep: Putative uncharacterized protein -
Homo sapiens (Human)
Length = 208
Score = 77.0 bits (181), Expect = 4e-13
Identities = 34/66 (51%), Positives = 47/66 (71%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQT 296
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+ K+ LK K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 297 EKKKEL 314
++K +
Sbjct: 101 REEKRV 106
>UniRef50_Q9FI15 Cluster: Similarity to small nuclear
ribonucleoprotein; n=6; Viridiplantae|Rep: Similarity to
small nuclear ribonucleoprotein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 254
Score = 72.5 bits (170), Expect = 9e-12
Identities = 33/65 (50%), Positives = 45/65 (69%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQT 296
M++ K++KM Q INYR+RV +QD R IG F AFD+HMNL+LGDCE KL +T
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 297 EKKKE 311
+++E
Sbjct: 61 NEERE 65
Score = 42.7 bits (96), Expect = 0.008
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +2
Query: 251 RKFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
RK K +REE+RTLG VLLRGE ++S+T+
Sbjct: 49 RKLPPAKGNKKTNEEREERRTLGLVLLRGEEVISMTV 85
>UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babesia
bovis|Rep: Sm domain containing protein - Babesia bovis
Length = 159
Score = 70.5 bits (165), Expect = 4e-11
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +3
Query: 126 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCE 254
GKN +MQQ + YRVRV ++D R F+GTF AFDKHMNL+L DCE
Sbjct: 3 GKNTRMQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCE 45
Score = 40.7 bits (91), Expect = 0.033
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLT 358
+FR K K E KRTLGF++LRGENIVS T
Sbjct: 46 EFRITKGKGPDKQKVELKRTLGFIMLRGENIVSFT 80
>UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B,
putative; n=3; Eukaryota|Rep: Small nuclear
ribonucleoprotein B, putative - Theileria parva
Length = 155
Score = 66.1 bits (154), Expect = 8e-10
Identities = 33/73 (45%), Positives = 46/73 (63%)
Frame = +3
Query: 126 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKK 305
GKN +MQ + Y VRV L+D+R F+GT A+DK+MNL+L DCE ++ L K +TE K
Sbjct: 3 GKNTRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEF-RMTLGKDKNRTEVK 61
Query: 306 KELWVLFFYVEKI 344
+ L + E I
Sbjct: 62 RTLGFVLLRGENI 74
Score = 38.3 bits (85), Expect = 0.17
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +2
Query: 299 EEKRTLGFVLLRGENIVSLT 358
E KRTLGFVLLRGENIVS T
Sbjct: 59 EVKRTLGFVLLRGENIVSFT 78
>UniRef50_Q55A45 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=2;
Dictyostelium discoideum|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 274
Score = 63.7 bits (148), Expect = 4e-09
Identities = 30/72 (41%), Positives = 46/72 (63%)
Frame = +3
Query: 129 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKK 308
K++KM Q+INYR+RV +QD R +G F AFDKHMN+++ D E ++ K K E+K+
Sbjct: 6 KSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQK-GKEDREEKR 64
Query: 309 ELWVLFFYVEKI 344
L ++ E +
Sbjct: 65 TLGMILIRGETV 76
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/36 (52%), Positives = 29/36 (80%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FR+I+ K + DREEKRTLG +L+RGE +VS+++
Sbjct: 48 EFRRIRQKGKE--DREEKRTLGMILIRGETVVSMSV 81
>UniRef50_Q5CME6 Cluster: Similar to small nuclear
ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
small nuclear ribonucleoprotein - Cryptosporidium
hominis
Length = 139
Score = 60.1 bits (139), Expect = 5e-08
Identities = 29/68 (42%), Positives = 42/68 (61%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKKELWV 320
MQ++INYR+RV +QD R +G AFD+HMNL+L DC+ E +K + E K+ L +
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQ--EYRRVKKGEEPKELKRSLGL 58
Query: 321 LFFYVEKI 344
+ E I
Sbjct: 59 IMLRGENI 66
>UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2;
Plasmodium|Rep: Ribonucleoprotein, putative - Plasmodium
falciparum (isolate 3D7)
Length = 201
Score = 59.3 bits (137), Expect = 9e-08
Identities = 24/61 (39%), Positives = 42/61 (68%)
Frame = +3
Query: 123 IGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEK 302
+GKN++++ + YRVRV + D+R F+GTF ++D+HMN++L D E K+ + L+ K
Sbjct: 1 MGKNSRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSLKEIK 60
Query: 303 K 305
+
Sbjct: 61 R 61
Score = 38.7 bits (86), Expect = 0.13
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLT 358
+FRK+KS+ + +E KR +G +L+RGENIVS T
Sbjct: 45 EFRKVKSQENSL--KEIKRVVGLILIRGENIVSFT 77
>UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167,
whole genome shotgun sequence; n=3;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_167, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 138
Score = 56.8 bits (131), Expect = 5e-07
Identities = 25/60 (41%), Positives = 39/60 (65%)
Frame = +3
Query: 123 IGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEK 302
+ + +K Q I+YRVR+ L D R +GTF AFDKH+N+IL +CE I +++T++
Sbjct: 1 MSQKSKFFQWIDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYRIRKQGIHEIETKR 60
>UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associated
protein B; n=4; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein-associated protein B - Saccharomyces
cerevisiae (Baker's yeast)
Length = 196
Score = 56.8 bits (131), Expect = 5e-07
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +3
Query: 114 KMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQ 293
K+ + ++++ I+Y++RV+ QD R +IG AFDKHMNL+L +C ++ KL+
Sbjct: 3 KIQVAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLR 62
Query: 294 TEK-KKELWVLFFYVEK 341
K K+ L VEK
Sbjct: 63 PRKDSKDGTTLNIKVEK 79
>UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3;
Plasmodium (Vinckeia)|Rep: Ribonucleoprotein, putative -
Plasmodium berghei
Length = 194
Score = 56.4 bits (130), Expect = 6e-07
Identities = 21/52 (40%), Positives = 37/52 (71%)
Frame = +3
Query: 123 IGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLK 278
+GKN +++ + YRVRV + D+R ++GTF ++D+HMN++L D E ++ K
Sbjct: 1 MGKNYRLESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKNK 52
Score = 36.3 bits (80), Expect = 0.70
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLT 358
+FR++K+K + +E KR +G +L+RG+NIVS T
Sbjct: 45 EFRRVKNKENNF--KEIKRVVGLILIRGDNIVSFT 77
>UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 158
Score = 56.0 bits (129), Expect = 8e-07
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQT 296
M + +K+ + IN RV+V++ D R F+G AFD H N++L DCE +LN +
Sbjct: 1 MQAPRGSKLSKFINSRVKVVISDHRYFVGQMLAFDTHSNIVLKDCEEYRRLNRRKAGELQ 60
Query: 297 EKKKELWVLFFYVEKI 344
E K+ + ++ E +
Sbjct: 61 EAKRNIGLMILRGETV 76
>UniRef50_A5E144 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 152
Score = 56.0 bits (129), Expect = 8e-07
Identities = 22/57 (38%), Positives = 38/57 (66%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKKE 311
M INYR+R++ D+RT++G+ +FDKH+NL+L D E S ++++ + +KE
Sbjct: 1 MSDLINYRLRILTVDNRTYVGSLLSFDKHLNLVLSDTEESRITKKSWIEMKNKSQKE 57
>UniRef50_Q4P7M4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 232
Score = 54.0 bits (124), Expect = 3e-06
Identities = 24/53 (45%), Positives = 31/53 (58%)
Frame = +3
Query: 129 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVK 287
K KM INYR+R+ L DSR +G AFD HMNL+L D + K+ + K
Sbjct: 7 KGGKMMSLINYRLRITLNDSRQIVGQLLAFDAHMNLVLADSQEYRKVKSRKAK 59
Score = 35.9 bits (79), Expect = 0.93
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +2
Query: 299 EEKRTLGFVLLRGENIVSLTI 361
E+KRTLG ++LRGENIVS+ I
Sbjct: 95 EQKRTLGLLILRGENIVSMAI 115
>UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Rep:
AER432Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 158
Score = 53.6 bits (123), Expect = 4e-06
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +3
Query: 120 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTE 299
T+ + ++ I+Y++RV+ QD R ++GT AFD HMNL+L DC + + LQ +
Sbjct: 4 TVSHRSTLKDLIDYKLRVLSQDGRVYVGTLLAFDAHMNLVLADCVEERLSDHHVRNLQKD 63
>UniRef50_Q59KX5 Cluster: Potential spliceosomal snRNA Sm core
binding protein B/B'; n=1; Candida albicans|Rep:
Potential spliceosomal snRNA Sm core binding protein
B/B' - Candida albicans (Yeast)
Length = 110
Score = 52.8 bits (121), Expect = 8e-06
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENS 260
M IN+R+++I D+RT++GT +FDKHMNL+L D E S
Sbjct: 1 MSDLINFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEES 40
>UniRef50_A3LXX4 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 142
Score = 52.8 bits (121), Expect = 8e-06
Identities = 24/59 (40%), Positives = 36/59 (61%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQ 293
+ I K KM I+YR+++ D+R FIG+ AFDKH+NL+L D E + IV ++
Sbjct: 4 LPITKTTKMSDLIHYRLKISTIDNRFFIGSLLAFDKHLNLVLSDTEETRITKKSIVSMK 62
>UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome B of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 191
Score = 52.0 bits (119), Expect = 1e-05
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +3
Query: 129 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL 290
K K+ I+YR+RV D R +IG AFD +MNL++GDC + +I+++
Sbjct: 9 KETKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEERMPHKQIIEV 62
>UniRef50_UPI0000499A4F Cluster: small nuclear ribonucleoprotein F;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein F - Entamoeba histolytica HM-1:IMSS
Length = 205
Score = 50.0 bits (114), Expect = 5e-05
Identities = 24/62 (38%), Positives = 41/62 (66%)
Frame = +3
Query: 129 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKK 308
K++K+ ++INY ++V + R F+G F AFDK+MN+IL E EK ++ +T ++K
Sbjct: 4 KSSKISKYINYTIKVTTIEGRNFVGKFLAFDKYMNMILS--ETIEKRT--VINKKTREEK 59
Query: 309 EL 314
E+
Sbjct: 60 EI 61
>UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB,
putative; n=2; Eukaryota|Rep: Small nuclear
ribonucleoprotein SmB, putative - Aspergillus fumigatus
(Sartorya fumigata)
Length = 357
Score = 48.4 bits (110), Expect = 2e-04
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +3
Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLK 278
INYR+R+ L D R G AFDKHMNL+L D E ++ K
Sbjct: 131 INYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRK 172
>UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-PA
- Drosophila melanogaster (Fruit fly)
Length = 95
Score = 43.6 bits (98), Expect = 0.005
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 251
++ +IN+ V +I D R FIGT K FD+ +N+I+ +C
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDEC 40
>UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;
Fungi/Metazoa group|Rep: Uncharacterized protein
C26A3.08 - Schizosaccharomyces pombe (Fission yeast)
Length = 147
Score = 43.6 bits (98), Expect = 0.005
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +3
Query: 138 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCE 254
KM +N+ + V +D RTF+G AFD MNL+L DC+
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQ 43
Score = 36.7 bits (81), Expect = 0.53
Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Frame = +2
Query: 251 RKFRKIKSKN-SKTADREEKRTLGFVLLRGENIVSLTI 361
+++R IK +N + EEKR LG V+LRGE IVSL++
Sbjct: 43 QEYRHIKKQNVPSNSVYEEKRMLGLVILRGEFIVSLSV 80
>UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4;
Thermoplasmatales|Rep: Small nuclear ribonucleoprotein -
Thermoplasma volcanium
Length = 71
Score = 43.2 bits (97), Expect = 0.006
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC-ENSEKLNLKI 281
+++ +N RV ++L+D+R GT +D +MN++L D ENSE ++ K+
Sbjct: 8 LEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDENSENVSRKL 55
>UniRef50_Q4D159 Cluster: Small nuclear ribonucleoprotein protein,
putative; n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein protein, putative - Trypanosoma cruzi
Length = 114
Score = 41.1 bits (92), Expect = 0.025
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKKEL 314
M +IN +R++L D R G +D+HMN++LGD S + K+ + ++ L
Sbjct: 6 MLHNINRTLRIVLIDGRELTGKLLVYDRHMNVVLGDATESREETKKMKEAGISPQRSL 63
>UniRef50_A7T7F0 Cluster: Predicted protein; n=3; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 86
Score = 39.1 bits (87), Expect = 0.099
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 138 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCE 254
+++ +N +RV + D RT IG+F DK N+ILG C+
Sbjct: 3 ELESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQ 41
>UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core,
putative; n=2; Culicidae|Rep: Small nuclear
ribonucleoprotein, core, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 162
Score = 38.7 bits (86), Expect = 0.13
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 96 LPNHSDKMTIGKN-NKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGD 248
L N + + I + + ++ ++N V +I D R F+GT K FD+ +N+IL +
Sbjct: 55 LSNRNQRYDIHETMSGLESYVNTTVSIITADGRNFVGTLKGFDQTINIILDE 106
>UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Plasmodium vivax
Length = 95
Score = 38.7 bits (86), Expect = 0.13
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC-ENSEKLNLKIVKL 290
++ ++ + VI DSR F G K FD+ N+ILG+C E K +L+ + L
Sbjct: 6 IESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNCYERIYKESLEKISL 56
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 38.7 bits (86), Expect = 0.13
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC-ENSEKLNLKIVKLQTEKKKEL 314
++ +++ RV + L+ +RT +GT +AFD H N++L D E +LN + + ++E++ E+
Sbjct: 8 LKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELS-ESERRCEM 65
>UniRef50_A2F7C1 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 99
Score = 38.3 bits (85), Expect = 0.17
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 93 YLPN--HSDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL 242
Y+P+ H + G ++ +N ++R+ L D R ++GTF AFDK N +L
Sbjct: 6 YIPSILHLPEHPTGAVKEVMDLLNTQLRLELNDERVYVGTFTAFDKFGNFVL 57
>UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=23; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm8 - Homo sapiens (Human)
Length = 96
Score = 37.5 bits (83), Expect = 0.30
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGD 248
++ +IN V VI D R +GT K FD+ +NLIL +
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDE 40
>UniRef50_Q5CLJ8 Cluster: U6 snRNA-associated sm-like protein; n=2;
Cryptosporidium|Rep: U6 snRNA-associated sm-like protein
- Cryptosporidium hominis
Length = 98
Score = 37.1 bits (82), Expect = 0.40
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +3
Query: 132 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKL-NLKIVKLQTEKKK 308
++ ++Q IN V V+ D++ ++G FD+ N++L +C SEK+ N + K++T +
Sbjct: 3 SSTLEQFINKTVSVLTVDNKVYVGNLVGFDQLTNIVLQNC--SEKIYNKDLNKVETVSME 60
Query: 309 EL 314
L
Sbjct: 61 SL 62
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 37.1 bits (82), Expect = 0.40
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +3
Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSE 263
+N V + L+ R F G K+FD HMNL+L D E E
Sbjct: 22 LNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE 58
>UniRef50_Q8N8A9 Cluster: CDNA FLJ39739 fis, clone SMINT2016440;
n=9; Catarrhini|Rep: CDNA FLJ39739 fis, clone
SMINT2016440 - Homo sapiens (Human)
Length = 193
Score = 36.7 bits (81), Expect = 0.53
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -1
Query: 653 SWPHHDPCPGGAPIIPGRRATHHGASS 573
S PHHDPCPGGAP+ G+SS
Sbjct: 66 SHPHHDPCPGGAPVRDTGSEDGSGSSS 92
>UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Piroplasmida|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Theileria parva
Length = 94
Score = 35.5 bits (78), Expect = 1.2
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 251
++Q I V VI D R F+G K FD+ NL+L +C
Sbjct: 5 LEQFIECSVFVISVDGRVFVGVLKGFDQLTNLVLYNC 41
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 35.5 bits (78), Expect = 1.2
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCE 254
+Q I +V V L+DS G ++FD+H+NL+L D E
Sbjct: 16 LQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAE 53
>UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11;
Saccharomycetales|Rep: Sm-like protein LSm1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 172
Score = 35.5 bits (78), Expect = 1.2
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 251
++ ++ V+L+D R G + FD++ NLIL DC
Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDC 82
>UniRef50_Q014C2 Cluster: Small Nuclear ribonucleoprotein splicing
factor; n=1; Ostreococcus tauri|Rep: Small Nuclear
ribonucleoprotein splicing factor - Ostreococcus tauri
Length = 110
Score = 35.1 bits (77), Expect = 1.6
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 251
++ RV V+ D R +GT + FD+ N+IL DC
Sbjct: 12 VHARVHVLTNDGRHVVGTLRGFDQVTNVILEDC 44
>UniRef50_UPI0000513250 Cluster: PREDICTED: similar to CG31950-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to
CG31950-PA - Apis mellifera
Length = 103
Score = 34.7 bits (76), Expect = 2.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 138 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 251
K++ +N +R+ + D R IG F D+ N+ILG C
Sbjct: 35 KLRGWLNRNLRIKMTDGRVLIGAFLCTDRDANVILGSC 72
>UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_122_3813_3433 - Giardia lamblia ATCC
50803
Length = 126
Score = 34.7 bits (76), Expect = 2.1
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 162 RVRVILQDSRTFIGTFKAFDKHMNLILGDCENS 260
RV V+LQ++ + G +FD+HMNLIL + E +
Sbjct: 64 RVSVLLQNNSSITGLLASFDEHMNLILINAEET 96
>UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p -
Drosophila melanogaster (Fruit fly)
Length = 103
Score = 34.3 bits (75), Expect = 2.8
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENS 260
++ +V V +++ R G AFD+H+N++LGD E +
Sbjct: 26 LDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEET 61
>UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 83
Score = 34.3 bits (75), Expect = 2.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 138 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGD 248
K+Q HIN V + Q R GT +FD +NL+L +
Sbjct: 11 KLQSHINKEVVIQFQGGRQVKGTLLSFDNQLNLVLDE 47
>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
protein Sm - Aeropyrum pernix
Length = 94
Score = 34.3 bits (75), Expect = 2.8
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +3
Query: 114 KMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGD----CENSEKLNLKI 281
K + +++H+N ++ V L+D ++G A D MNLIL D +N +L KI
Sbjct: 7 KQLVNPFKYLKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIEVADNGTRLVAKI 66
>UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1;
Aeropyrum pernix|Rep: Putative snRNP Sm-like protein -
Aeropyrum pernix
Length = 77
Score = 34.3 bits (75), Expect = 2.8
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +3
Query: 108 SDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLK 278
S +T+ M +++ V V L+ G K +D+H+N+ILGD E + +++
Sbjct: 2 SGPITLPTLRMMLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIGETSIR 58
>UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=5; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm5 - Saccharomyces cerevisiae (Baker's yeast)
Length = 93
Score = 34.3 bits (75), Expect = 2.8
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGD 248
IN +V ++LQ +R F GT FD +N+IL D
Sbjct: 16 INQKVLIVLQSNREFEGTLVGFDDFVNVILED 47
>UniRef50_UPI0000D55DF4 Cluster: PREDICTED: similar to CG31950-PA;
n=2; Endopterygota|Rep: PREDICTED: similar to CG31950-PA
- Tribolium castaneum
Length = 134
Score = 33.9 bits (74), Expect = 3.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 138 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 251
K++ +N +R+ + D R +G F D+ N+ILG C
Sbjct: 38 KLRSWLNKSLRIQMFDGRVLVGVFLCTDRDANVILGSC 75
>UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=39; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm3 - Homo sapiens (Human)
Length = 102
Score = 33.9 bits (74), Expect = 3.7
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENS 260
++ R+ V +++ R G A+D+H+N+ILGD E +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 33.5 bits (73), Expect = 4.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 126 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCE 254
G + ++ R+++ L RT IGT FD MNL+L C+
Sbjct: 13 GYQADLNKYFGKRLKIKLNAKRTIIGTVIGFDIFMNLVLDHCK 55
>UniRef50_Q0ULJ4 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 234
Score = 33.5 bits (73), Expect = 4.9
Identities = 11/33 (33%), Positives = 24/33 (72%)
Frame = +3
Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 251
++ +V V+L+D + +IG +++D+ NL+L +C
Sbjct: 101 VDKKVDVLLRDEKEYIGILRSYDQFANLVLTEC 133
>UniRef50_Q8SQH7 Cluster: Probable U6 snRNA-associated Sm-like
protein; n=1; Encephalitozoon cuniculi|Rep: Probable U6
snRNA-associated Sm-like protein - Encephalitozoon
cuniculi
Length = 70
Score = 33.5 bits (73), Expect = 4.9
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTE 299
++ ++ RV V + + GT + FD+H+NL+L C + E K++ L+ E
Sbjct: 8 LKMYLKERVEVKTKSGEAYTGTLEGFDEHINLML-TCSSVEGSEDKVLFLRGE 59
>UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=1; Schizosaccharomyces pombe|Rep: U6 snRNA-associated
Sm-like protein LSm8 - Schizosaccharomyces pombe
(Fission yeast)
Length = 94
Score = 33.5 bits (73), Expect = 4.9
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 162 RVRVILQDSRTFIGTFKAFDKHMNLILGD 248
RV+VI D R +G+ K FD NLIL D
Sbjct: 10 RVQVITNDGRVVLGSLKGFDHTTNLILSD 38
>UniRef50_Q3EZ01 Cluster: Putative uncharacterized protein; n=1;
Bacillus thuringiensis serovar israelensis ATCC
35646|Rep: Putative uncharacterized protein - Bacillus
thuringiensis serovar israelensis ATCC 35646
Length = 508
Score = 33.1 bits (72), Expect = 6.5
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +3
Query: 96 LPNHSDKM--TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC---ENS 260
LP H+D+ + K + + +N +R LQD + +G AF++ +N+ E
Sbjct: 99 LPKHTDEKYKMLEKRTEGMERLNVELRKQLQDLKDKLGDSVAFEEFLNVKKEKSTLEERI 158
Query: 261 EKLNLKIVKLQTEKK 305
+LN IV L++EK+
Sbjct: 159 TELNQSIVGLESEKR 173
>UniRef50_Q0UHH8 Cluster: Predicted protein; n=2;
Pezizomycotina|Rep: Predicted protein - Phaeosphaeria
nodorum (Septoria nodorum)
Length = 98
Score = 33.1 bits (72), Expect = 6.5
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL 242
+ ++N RV V+ D RT IGT + D MNL+L
Sbjct: 3 LNAYLNKRVTVLTLDGRTMIGTLFSCDGSMNLVL 36
>UniRef50_A6RWH0 Cluster: Predicted protein; n=10;
Pezizomycotina|Rep: Predicted protein - Botryotinia
fuckeliana B05.10
Length = 98
Score = 33.1 bits (72), Expect = 6.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL 242
+ ++N +V ++ DSRT +GT + D+ NL+L
Sbjct: 3 LSSYVNKKVLILTADSRTLVGTLLSCDQQTNLVL 36
>UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 129
Score = 32.7 bits (71), Expect = 8.6
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGD 248
++ ++ V+L+D R FIG + FD+ N++L D
Sbjct: 9 VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQD 40
>UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 84
Score = 32.7 bits (71), Expect = 8.6
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 162 RVRVILQDSRTFIGTFKAFDKHMNLILGD 248
RV+V +Q+ + G A+D+H N+ILGD
Sbjct: 18 RVKVKVQEGQELEGVLHAYDEHYNIILGD 46
>UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_24,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 152
Score = 32.7 bits (71), Expect = 8.6
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 9/65 (13%)
Frame = +3
Query: 177 LQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVK---------LQTEKKKELWVLFF 329
L+++R +G KAFD+HMN+IL EN ++ ++I K Q + + + ++F+
Sbjct: 76 LRNNRKHLGRVKAFDRHMNMIL---ENLTEMWIEISKETKGKSPCYKQRKIQNQYKIIFY 132
Query: 330 YVEKI 344
Y+ K+
Sbjct: 133 YIPKM 137
>UniRef50_A5DU89 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 557
Score = 32.7 bits (71), Expect = 8.6
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 213 AFDKHMNLILGDCENSEKLNLKIVKLQTEKKKELWV 320
A+D HM+L C++ E LNL + +LQ E LWV
Sbjct: 380 AWDIHMSLPYSTCKDDELLNLPMCELQDEGIIMLWV 415
>UniRef50_A5DKA3 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 516
Score = 32.7 bits (71), Expect = 8.6
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 213 AFDKHMNLILGDCENSEKLNLKIVKLQTEKKKELWV 320
A+D HM+L G C++ E ++L + KLQ E LWV
Sbjct: 340 AWDIHMSLPYGTCKDLELMSLPVDKLQDEGIIILWV 375
>UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4;
Methanococcus|Rep: Like-Sm ribonucleoprotein, core -
Methanococcus maripaludis
Length = 72
Score = 32.7 bits (71), Expect = 8.6
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDC--ENSEK 266
IN V V L+D + G KA+D HMN+ L + EN E+
Sbjct: 15 INTNVTVFLKDGKVVKGRLKAYDLHMNVALENAKIENDEE 54
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 567,912,457
Number of Sequences: 1657284
Number of extensions: 10164926
Number of successful extensions: 28876
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 27858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28862
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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