Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060447.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0479 + 3606663-3607448                                           69   5e-12
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297     34   0.12 
11_03_0088 - 9780355-9780558,9780636-9780725,9783905-9784073,978...    33   0.21 
05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184...    32   0.49 
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332...    31   0.65 
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488...    31   0.86 
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461     31   1.1  
02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619     30   1.5  
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032...    30   2.0  
02_05_0887 + 32516255-32517292                                         29   4.6  
09_05_0017 - 20095011-20095667                                         28   8.0  
07_03_0136 + 14089787-14090269                                         28   8.0  
07_01_1054 + 9250298-9250428,9250889-9251489                           28   8.0  
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962...    28   8.0  
01_06_0502 + 29847918-29848154,29848652-29848951                       28   8.0  

>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 29/51 (56%), Positives = 37/51 (72%)
 Frame = +3

Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKL 269
           M+  K +KM Q +NYR+RV +QD R  +G F AFD+HMNL+LGDCE   KL
Sbjct: 1   MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL 51



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 23/38 (60%), Positives = 32/38 (84%), Gaps = 2/38 (5%)
 Frame = +2

Query: 254 KFRKIK-SKNSKTA-DREEKRTLGFVLLRGENIVSLTI 361
           +FRK+  SK+SKT  +REE+RTLG +LLRGE +VS+T+
Sbjct: 47  EFRKLPPSKSSKTTGEREERRTLGLLLLRGEEVVSMTV 84


>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
          Length = 104

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCE 254
           ++ R+ V L+  R   G   A+D+H+N+ILGD E
Sbjct: 27  LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 60


>11_03_0088 -
           9780355-9780558,9780636-9780725,9783905-9784073,
           9784230-9784638,9784725-9785562
          Length = 569

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 668 SWRTPSWPHHDPCPGGAPIIPGRRATHHGASSHLKEEQKVD 546
           SWRTPSW    P    A    GR A+   A +++ E++ VD
Sbjct: 410 SWRTPSWRMSLPPASDAEAATGRSASAPDAGANVAEDEWVD 450


>05_03_0462 -
           14316486-14316602,14316689-14316793,14318406-14318486,
           14318593-14318610
          Length = 106

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = +3

Query: 156 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKKEL 314
           N +V +  ++++  +G  +AFD+H N++L   EN  ++  ++ K    KKK L
Sbjct: 31  NTQVLINCRNNKKLLGRVRAFDRHCNMVL---ENVREMWTEVPKTGKGKKKAL 80


>01_07_0305 -
           42631214-42631330,42631423-42631527,42633208-42633216,
           42635198-42636142,42636349-42636450,42637210-42637302
          Length = 456

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +3

Query: 162 RVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKKEL 314
           +V +  Q+++  +G  +AFD H N++L   EN  ++  ++ K    KKK L
Sbjct: 383 KVLINCQNNKKLLGRVRAFDSHCNMVL---ENVREMWTEVPKTGKGKKKAL 430


>03_04_0043 +
           16747103-16747137,16747237-16747259,16748735-16748856,
           16748980-16749042
          Length = 80

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 10/39 (25%), Positives = 27/39 (69%)
 Frame = +3

Query: 126 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL 242
           G+   ++++++ ++++ L  +R  +GT + FD+ MNL++
Sbjct: 5   GQPPDLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVV 43


>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
          Length = 353

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +2

Query: 506 GGHLNNTWAPGNRGQLSAPPSNARRPHDGWPSFQE*WELLLGMGRGGARTG 658
           G   +N+W+ G+   +S     A   HDGW +         G G GG   G
Sbjct: 65  GHRASNSWSSGDTDSVSGGGGGAVMEHDGWSTSPNSVRCAAGGGGGGGGGG 115


>02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619
          Length = 398

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 144 QQHINYRVRVILQDSRTFIGTFKAFDKHMN 233
           +Q++N + R  + D  +FIG++K   KH+N
Sbjct: 152 RQYLNRKKRACMHDGCSFIGSYKELCKHVN 181


>05_07_0342 +
           29402867-29402906,29403012-29403052,29403146-29403220,
           29403523-29403648,29404195-29404247,29404385-29404475
          Length = 141

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGD 248
           ++  ++  + VI  D R  +GT + FD+  N+IL +
Sbjct: 8   LESLVDQIISVITNDGRNIVGTLRGFDQATNIILDE 43


>02_05_0887 + 32516255-32517292
          Length = 345

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 144 QQHINYRVRVILQDSRTFIGTFKAFDKHM 230
           + ++N + R  +QD  +F+GT+K   KH+
Sbjct: 149 RSYLNGKRRTCMQDGCSFVGTYKELRKHV 177


>09_05_0017 - 20095011-20095667
          Length = 218

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 589 WVALLPGMMGAPPGHGSWWGQDGVLQECD 675
           + +L  G++  PP  G+WW +DG L   D
Sbjct: 185 YASLAQGLLVEPPAAGAWW-EDGELAGSD 212


>07_03_0136 + 14089787-14090269
          Length = 160

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 598 LLPGMMGAPPGHGSWWGQDGVLQECD 675
           ++PGMM A    G WW +   L++ D
Sbjct: 66  VMPGMMAASRSRGRWWRRRPALRQGD 91


>07_01_1054 + 9250298-9250428,9250889-9251489
          Length = 243

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 497 RGVGGHLNNTWAPGNRGQLSAPPSNARRPHDGWPS 601
           RG GG +      G+ G    PP+   RP   W S
Sbjct: 154 RGTGGRVQRWGTGGDNGGDGEPPTRQTRPDPRWTS 188


>05_04_0169 -
           18694418-18694453,18694516-18694627,18696095-18696243,
           18696980-18697033,18697110-18697222,18697323-18697374
          Length = 171

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSE 263
           I  ++ VI++  +  +GT   FD ++N++L D    E
Sbjct: 88  IGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYE 124


>01_06_0502 + 29847918-29848154,29848652-29848951
          Length = 178

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 592 VALLPGMMGAPPGHGSWWGQDG 657
           +  +PG  G  P  G WW  DG
Sbjct: 10  IVAVPGFGGPAPSPGRWWPMDG 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,527,314
Number of Sequences: 37544
Number of extensions: 287739
Number of successful extensions: 956
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)