Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060447.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)                   85   7e-17
SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.002
SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)                   32   0.50 
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)                   29   3.5  
SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)           28   8.1  

>SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)
          Length = 327

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 39/67 (58%), Positives = 48/67 (71%)
 Frame = +3

Query: 114 KMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQ 293
           K TIGK++KM  HINYR+R  LQD R FIGTF AFDKHMN+ILGDC+   K+  K  K Q
Sbjct: 23  KPTIGKSSKMLLHINYRMRCTLQDGRVFIGTFLAFDKHMNVILGDCDEFRKIKGKSSKAQ 82

Query: 294 TEKKKEL 314
             ++K +
Sbjct: 83  EREEKRV 89



 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 24/36 (66%), Positives = 31/36 (86%)
 Frame = +2

Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
           +FRKIK K+SK  +REEKR LG VLLRGE++VS+T+
Sbjct: 70  EFRKIKGKSSKAQEREEKRVLGLVLLRGEHLVSMTV 105


>SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +3

Query: 129 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCE 254
           +  +++  +N  +RV + D RT IG+F   DK  N+ILG C+
Sbjct: 29  QRKELESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQ 70


>SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)
          Length = 75

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 16/55 (29%), Positives = 32/55 (58%)
 Frame = +3

Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKKELW 317
           ++ R+ V +++ R   G   A+D+H+N+IL D E +    +  V++  E  +EL+
Sbjct: 24  LDERIYVKMRNDRELRGRLHAYDQHLNMILSDVEET----ITTVEIDEETFEELF 74


>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 93  YLPNHSDKMTIGKNNKMQQHINY--RVRVILQDSR 191
           ++P H+  M IGK  +M + I +  RVR I+  SR
Sbjct: 334 FIPEHAMGMVIGKKGRMLEEIKHKTRVRPIIDKSR 368


>SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)
          Length = 443

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +3

Query: 156 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKK 308
           N +V +  +++R  +   KAFD+H N++L   EN +++  +  K    KKK
Sbjct: 29  NTQVLINCRNNRKLLARVKAFDRHCNMVL---ENVKEMWTETPKSGKGKKK 76


>SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 147 VASYCFCRSSFYRSD*EDITRYLESFNLLQRYSLDSC 37
           V ++ FC  SF RSD  ++ R+L +    +R+  D C
Sbjct: 373 VCNWLFCGKSFTRSD--ELQRHLRTHTGEKRFQCDEC 407


>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
          Length = 661

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +3

Query: 129 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKK- 305
           ++ +M +H  YR  + L+DS  F    +      NL L  CE ++ L     +L   KK 
Sbjct: 485 RHQRMMRHNQYRELLGLRDSLDFSSNMEDSHATQNLRLSTCELTKSLRNFSKELPFIKKG 544

Query: 306 -KELWV-LFFY 332
             E  + LFFY
Sbjct: 545 HAETQINLFFY 555


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,622,024
Number of Sequences: 59808
Number of extensions: 325254
Number of successful extensions: 711
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)