Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060447.seq
(686 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 86 1e-16
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 86 1e-16
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 86 1e-16
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 86 1e-16
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 86 1e-16
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 86 1e-16
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 86 1e-16
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 86 1e-16
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 86 1e-16
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 86 1e-16
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 86 1e-16
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 86 1e-16
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 86 1e-16
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 86 1e-16
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 86 1e-16
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 86 1e-16
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 86 1e-16
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 86 1e-16
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 86 1e-16
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 86 1e-16
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 85 3e-16
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 85 3e-16
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 77 6e-14
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 77 6e-14
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 75 2e-13
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 75 2e-13
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 57 7e-08
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 38 0.044
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 38 0.044
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 38 0.044
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 38 0.044
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 38 0.044
BC132962-1|AAI32963.1| 193|Homo sapiens hypothetical FLJ39739 p... 37 0.077
AK097058-1|BAC04939.1| 193|Homo sapiens protein ( Homo sapiens ... 37 0.077
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 34 0.55
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 34 0.55
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 34 0.55
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 34 0.55
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 34 0.55
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 32 2.2
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 32 2.2
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 32 2.2
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 32 2.2
BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisia... 31 3.8
AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens ... 31 3.8
AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein. 31 3.8
AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin pr... 31 3.8
AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin pr... 31 3.8
AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein prot... 31 3.8
AL158165-1|CAI14377.1| 533|Homo sapiens novel protein (KIAA0894... 30 8.9
AB020701-1|BAA74917.2| 553|Homo sapiens KIAA0894 protein protein. 30 8.9
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 86.2 bits (204), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL-Q 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 56.8 bits (131), Expect = 7e-08
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 82
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 86.2 bits (204), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL-Q 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 56.8 bits (131), Expect = 7e-08
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 82
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 86.2 bits (204), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL-Q 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 56.8 bits (131), Expect = 7e-08
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 82
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 86.2 bits (204), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL-Q 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 56.8 bits (131), Expect = 7e-08
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 82
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 86.2 bits (204), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL-Q 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 56.8 bits (131), Expect = 7e-08
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 82
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 86.2 bits (204), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL-Q 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 56.8 bits (131), Expect = 7e-08
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 82
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 86.2 bits (204), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL-Q 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 56.8 bits (131), Expect = 7e-08
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 82
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 86.2 bits (204), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL-Q 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 56.8 bits (131), Expect = 7e-08
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 82
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 86.2 bits (204), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL-Q 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 56.8 bits (131), Expect = 7e-08
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 82
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 85.8 bits (203), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVK-LQ 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 60.1 bits (139), Expect = 7e-09
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 85.8 bits (203), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVK-LQ 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 60.1 bits (139), Expect = 7e-09
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 85.8 bits (203), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVK-LQ 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 60.1 bits (139), Expect = 7e-09
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 85.8 bits (203), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVK-LQ 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 60.1 bits (139), Expect = 7e-09
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 85.8 bits (203), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVK-LQ 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 60.1 bits (139), Expect = 7e-09
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 85.8 bits (203), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVK-LQ 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 60.1 bits (139), Expect = 7e-09
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 85.8 bits (203), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVK-LQ 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 60.1 bits (139), Expect = 7e-09
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 85.8 bits (203), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVK-LQ 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 60.1 bits (139), Expect = 7e-09
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 85.8 bits (203), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVK-LQ 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 60.1 bits (139), Expect = 7e-09
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 85.8 bits (203), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVK-LQ 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 60.1 bits (139), Expect = 7e-09
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 85.8 bits (203), Expect = 1e-16
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVK-LQ 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 60.1 bits (139), Expect = 7e-09
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 84.6 bits (200), Expect = 3e-16
Identities = 41/77 (53%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLK-IVKLQ 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K + +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 58.4 bits (135), Expect = 2e-08
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KNS+ A+REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNSEQAEREEKRVLGLVLLRGENLVSMTV 82
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 84.6 bits (200), Expect = 3e-16
Identities = 42/77 (54%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL-Q 293
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC K+ K K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPE 60
Query: 294 TEKKKELWVLFFYVEKI 344
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 56.8 bits (131), Expect = 7e-08
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 47 EFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 82
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 77.0 bits (181), Expect = 6e-14
Identities = 34/66 (51%), Positives = 47/66 (71%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQT 296
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+ K+ LK K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 297 EKKKEL 314
++K +
Sbjct: 101 REEKRV 106
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 77.0 bits (181), Expect = 6e-14
Identities = 34/66 (51%), Positives = 47/66 (71%)
Frame = +3
Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQT 296
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+ K+ LK K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 297 EKKKEL 314
++K +
Sbjct: 101 REEKRV 106
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 75.4 bits (177), Expect = 2e-13
Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = +3
Query: 138 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVK-LQTEKKKEL 314
KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K + E+K+ L
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 315 WVLFFYVEKI 344
++ E +
Sbjct: 61 GLVLLRGENL 70
Score = 60.1 bits (139), Expect = 7e-09
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 40 EFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 75
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 75.4 bits (177), Expect = 2e-13
Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = +3
Query: 138 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVK-LQTEKKKEL 314
KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+ K+ K K + E+K+ L
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 315 WVLFFYVEKI 344
++ E +
Sbjct: 61 GLVLLRGENL 70
Score = 60.1 bits (139), Expect = 7e-09
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 40 EFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 75
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 56.8 bits (131), Expect = 7e-08
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2
Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
+FRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 25 EFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 60
Score = 53.2 bits (122), Expect = 8e-07
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +3
Query: 183 DSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL-QTEKKKELWVLFFYVEKI 344
D R FIGTFKAFDKHMNLIL DC+ K+ K K + E+K+ L ++ E +
Sbjct: 1 DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 55
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 37.5 bits (83), Expect = 0.044
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGD 248
++ +IN V VI D R +GT K FD+ +NLIL +
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDE 40
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 37.5 bits (83), Expect = 0.044
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGD 248
++ +IN V VI D R +GT K FD+ +NLIL +
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDE 40
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 37.5 bits (83), Expect = 0.044
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGD 248
++ +IN V VI D R +GT K FD+ +NLIL +
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDE 40
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 37.5 bits (83), Expect = 0.044
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGD 248
++ +IN V VI D R +GT K FD+ +NLIL +
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDE 40
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 37.5 bits (83), Expect = 0.044
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGD 248
++ +IN V VI D R +GT K FD+ +NLIL +
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDE 40
>BC132962-1|AAI32963.1| 193|Homo sapiens hypothetical FLJ39739
protein.
Length = 193
Score = 36.7 bits (81), Expect = 0.077
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -1
Query: 653 SWPHHDPCPGGAPIIPGRRATHHGASS 573
S PHHDPCPGGAP+ G+SS
Sbjct: 66 SHPHHDPCPGGAPVRDTGSEDGSGSSS 92
>AK097058-1|BAC04939.1| 193|Homo sapiens protein ( Homo sapiens
cDNA FLJ39739 fis, clone SMINT2016440. ).
Length = 193
Score = 36.7 bits (81), Expect = 0.077
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -1
Query: 653 SWPHHDPCPGGAPIIPGRRATHHGASS 573
S PHHDPCPGGAP+ G+SS
Sbjct: 66 SHPHHDPCPGGAPVRDTGSEDGSGSSS 92
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 33.9 bits (74), Expect = 0.55
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENS 260
++ R+ V +++ R G A+D+H+N+ILGD E +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 33.9 bits (74), Expect = 0.55
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENS 260
++ R+ V +++ R G A+D+H+N+ILGD E +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 33.9 bits (74), Expect = 0.55
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENS 260
++ R+ V +++ R G A+D+H+N+ILGD E +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 33.9 bits (74), Expect = 0.55
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENS 260
++ R+ V +++ R G A+D+H+N+ILGD E +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 33.9 bits (74), Expect = 0.55
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENS 260
++ R+ V +++ R G A+D+H+N+ILGD E +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 31.9 bits (69), Expect = 2.2
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +3
Query: 156 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKK 308
N +V + ++++ +G KAFD+H N++L EN +++ ++ K KKK
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVL---ENVKEMWTEVPKSGKGKKK 86
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 31.9 bits (69), Expect = 2.2
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +3
Query: 156 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKK 308
N +V + ++++ +G KAFD+H N++L EN +++ ++ K KKK
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVL---ENVKEMWTEVPKSGKGKKK 86
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 31.9 bits (69), Expect = 2.2
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +3
Query: 156 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKK 308
N +V + ++++ +G KAFD+H N++L EN +++ ++ K KKK
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVL---ENVKEMWTEVPKSGKGKKK 86
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 31.9 bits (69), Expect = 2.2
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +3
Query: 156 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKK 308
N +V + ++++ +G KAFD+H N++L EN +++ ++ K KKK
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVL---ENVKEMWTEVPKSGKGKKK 86
>BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisiae)
protein.
Length = 360
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 132 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 251
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens
cDNA FLJ32378 fis, clone SKMUS1000022, weakly similar to
NUCLEAR PORE PROTEIN SEH1 HOMOLOG. ).
Length = 421
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 132 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 251
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein.
Length = 360
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 132 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 251
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin
protein SEH1B protein.
Length = 421
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 132 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 251
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin
protein SEH1A protein.
Length = 360
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 132 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 251
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein
protein.
Length = 360
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 132 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 251
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AL158165-1|CAI14377.1| 533|Homo sapiens novel protein (KIAA0894)
protein.
Length = 533
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 656 PSWPHHDPCP-GGAPIIPGRRATHH 585
PS PH D P GG P++P R ++ H
Sbjct: 406 PSQPHQDQPPSGGKPVVPTRLSSRH 430
>AB020701-1|BAA74917.2| 553|Homo sapiens KIAA0894 protein protein.
Length = 553
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 656 PSWPHHDPCP-GGAPIIPGRRATHH 585
PS PH D P GG P++P R ++ H
Sbjct: 426 PSQPHQDQPPSGGKPVVPTRLSSRH 450
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,422,862
Number of Sequences: 237096
Number of extensions: 1655752
Number of successful extensions: 4220
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 3969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4220
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -