Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060447.seq
         (686 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L02919-1|AAA28858.1|  199|Drosophila melanogaster ribonucleoprot...   103   2e-22
AY061171-1|AAL28719.1|  199|Drosophila melanogaster LD14049p pro...   103   2e-22
AE014134-1881|AAF52947.1|  199|Drosophila melanogaster CG5352-PA...   103   2e-22
BT023632-1|AAY85032.1|   95|Drosophila melanogaster IP05684p pro...    44   3e-04
AE014296-355|AAF47567.1|   95|Drosophila melanogaster CG2021-PA ...    44   3e-04
BT001552-1|AAN71307.1|  103|Drosophila melanogaster RE11655p pro...    34   0.16 
AE014297-3433|AAN13967.1|  103|Drosophila melanogaster CG31184-P...    34   0.16 
AY113521-1|AAM29526.1|   91|Drosophila melanogaster RE60135p pro...    31   1.5  
AE014296-1060|AAF50703.1|   91|Drosophila melanogaster CG6610-PA...    31   1.5  
AY069315-1|AAL39460.1|  119|Drosophila melanogaster LD03002p pro...    31   2.0  
AE014297-442|AAF54135.1|  119|Drosophila melanogaster CG1249-PA ...    31   2.0  
AY070698-1|AAL48169.1|   76|Drosophila melanogaster RH35475p pro...    30   3.4  
AE014298-2437|AAF48634.1|   76|Drosophila melanogaster CG9742-PA...    30   3.4  
AE014296-2059|AAF49989.1|  747|Drosophila melanogaster CG7260-PA...    29   7.9  

>L02919-1|AAA28858.1|  199|Drosophila melanogaster ribonucleoprotein
           protein.
          Length = 199

 Score =  103 bits (247), Expect = 2e-22
 Identities = 50/77 (64%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +3

Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL-Q 293
           MTIGKNNKM QH+NYRVR++LQDSRTFIGTFKAFDKHMNLILGDCE   K+  K  K+ +
Sbjct: 1   MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE 60

Query: 294 TEKKKELWVLFFYVEKI 344
            E+K+ L  +    E I
Sbjct: 61  REEKRVLGFVLLRGENI 77



 Score = 63.3 bits (147), Expect = 3e-10
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = +2

Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
           +FRKI+SKNSK  +REEKR LGFVLLRGENIVSLT+
Sbjct: 47  EFRKIRSKNSKVPEREEKRVLGFVLLRGENIVSLTV 82


>AY061171-1|AAL28719.1|  199|Drosophila melanogaster LD14049p
           protein.
          Length = 199

 Score =  103 bits (247), Expect = 2e-22
 Identities = 50/77 (64%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +3

Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL-Q 293
           MTIGKNNKM QH+NYRVR++LQDSRTFIGTFKAFDKHMNLILGDCE   K+  K  K+ +
Sbjct: 1   MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE 60

Query: 294 TEKKKELWVLFFYVEKI 344
            E+K+ L  +    E I
Sbjct: 61  REEKRVLGFVLLRGENI 77



 Score = 63.3 bits (147), Expect = 3e-10
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = +2

Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
           +FRKI+SKNSK  +REEKR LGFVLLRGENIVSLT+
Sbjct: 47  EFRKIRSKNSKVPEREEKRVLGFVLLRGENIVSLTV 82


>AE014134-1881|AAF52947.1|  199|Drosophila melanogaster CG5352-PA
           protein.
          Length = 199

 Score =  103 bits (247), Expect = 2e-22
 Identities = 50/77 (64%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +3

Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKL-Q 293
           MTIGKNNKM QH+NYRVR++LQDSRTFIGTFKAFDKHMNLILGDCE   K+  K  K+ +
Sbjct: 1   MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE 60

Query: 294 TEKKKELWVLFFYVEKI 344
            E+K+ L  +    E I
Sbjct: 61  REEKRVLGFVLLRGENI 77



 Score = 63.3 bits (147), Expect = 3e-10
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = +2

Query: 254 KFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
           +FRKI+SKNSK  +REEKR LGFVLLRGENIVSLT+
Sbjct: 47  EFRKIRSKNSKVPEREEKRVLGFVLLRGENIVSLTV 82


>BT023632-1|AAY85032.1|   95|Drosophila melanogaster IP05684p
           protein.
          Length = 95

 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 16/37 (43%), Positives = 26/37 (70%)
 Frame = +3

Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 251
           ++ +IN+ V +I  D R FIGT K FD+ +N+I+ +C
Sbjct: 4   LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDEC 40


>AE014296-355|AAF47567.1|   95|Drosophila melanogaster CG2021-PA
           protein.
          Length = 95

 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 16/37 (43%), Positives = 26/37 (70%)
 Frame = +3

Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 251
           ++ +IN+ V +I  D R FIGT K FD+ +N+I+ +C
Sbjct: 4   LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDEC 40


>BT001552-1|AAN71307.1|  103|Drosophila melanogaster RE11655p
           protein.
          Length = 103

 Score = 34.3 bits (75), Expect = 0.16
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +3

Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENS 260
           ++ +V V +++ R   G   AFD+H+N++LGD E +
Sbjct: 26  LDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEET 61


>AE014297-3433|AAN13967.1|  103|Drosophila melanogaster CG31184-PA
           protein.
          Length = 103

 Score = 34.3 bits (75), Expect = 0.16
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +3

Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENS 260
           ++ +V V +++ R   G   AFD+H+N++LGD E +
Sbjct: 26  LDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEET 61


>AY113521-1|AAM29526.1|   91|Drosophila melanogaster RE60135p
           protein.
          Length = 91

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +3

Query: 96  LPNHSDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSE 263
           +P  S+  T+     + + I  R+ +I+++ +  +GT   FD  +N++L D    E
Sbjct: 4   VPPPSNISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYE 59


>AE014296-1060|AAF50703.1|   91|Drosophila melanogaster CG6610-PA
           protein.
          Length = 91

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +3

Query: 96  LPNHSDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSE 263
           +P  S+  T+     + + I  R+ +I+++ +  +GT   FD  +N++L D    E
Sbjct: 4   VPPPSNISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYE 59


>AY069315-1|AAL39460.1|  119|Drosophila melanogaster LD03002p
           protein.
          Length = 119

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 15/51 (29%), Positives = 31/51 (60%)
 Frame = +3

Query: 156 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKK 308
           N +V +  ++++  +G  KAFD+H N++L   EN +++  ++ +    KKK
Sbjct: 38  NTQVLINCRNNKKLLGRVKAFDRHCNMVL---ENVKEMWTELPRTGKGKKK 85


>AE014297-442|AAF54135.1|  119|Drosophila melanogaster CG1249-PA
           protein.
          Length = 119

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 15/51 (29%), Positives = 31/51 (60%)
 Frame = +3

Query: 156 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKK 308
           N +V +  ++++  +G  KAFD+H N++L   EN +++  ++ +    KKK
Sbjct: 38  NTQVLINCRNNKKLLGRVKAFDRHCNMVL---ENVKEMWTELPRTGKGKKK 85


>AY070698-1|AAL48169.1|   76|Drosophila melanogaster RH35475p
           protein.
          Length = 76

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
 Frame = +3

Query: 138 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGD----CENSEKLNLKIVKLQ 293
           +++++++ R+ + L   R   G  + FD  MN++L D    C+++ K N+ +V ++
Sbjct: 8   EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIR 63


>AE014298-2437|AAF48634.1|   76|Drosophila melanogaster CG9742-PA
           protein.
          Length = 76

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
 Frame = +3

Query: 138 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGD----CENSEKLNLKIVKLQ 293
           +++++++ R+ + L   R   G  + FD  MN++L D    C+++ K N+ +V ++
Sbjct: 8   EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIR 63


>AE014296-2059|AAF49989.1|  747|Drosophila melanogaster CG7260-PA
           protein.
          Length = 747

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 512 HLNNTWAPGNRGQLSAPPSNARRPHDGWPSFQE*W 616
           ++N  W PG  G+   PPSN    H   P+F   W
Sbjct: 199 YVNGEWVPG--GKAEVPPSNPIYVHPESPNFGAHW 231


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,589,349
Number of Sequences: 53049
Number of extensions: 473158
Number of successful extensions: 1272
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)