Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060447.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical pr...    85   6e-17
Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical pr...    34   0.11 
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    32   0.33 
U42436-7|AAO61428.2|  223|Caenorhabditis elegans Hypothetical pr...    32   0.44 
AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...    32   0.44 
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical p...    29   3.1  
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    29   3.1  
AF038608-14|AAT92087.1|  314|Caenorhabditis elegans Serpentine r...    29   4.1  
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso...    28   5.4  
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso...    28   5.4  
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor...    28   5.4  
AF067945-7|ABQ13059.1|  954|Caenorhabditis elegans Mechanosensor...    28   5.4  
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor...    28   5.4  
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor...    28   5.4  
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor...    28   5.4  
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor...    28   5.4  
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor...    28   5.4  
AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    27   9.5  

>Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical
           protein W08E3.1 protein.
          Length = 160

 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 36/66 (54%), Positives = 48/66 (72%)
 Frame = +3

Query: 117 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQT 296
           MTI KNNKM  H+NYR+++ILQD RTFIG FKAFDKHMN++L +CE   ++  K  K   
Sbjct: 1   MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTD 60

Query: 297 EKKKEL 314
            ++K +
Sbjct: 61  GEEKRI 66



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = +2

Query: 260 RKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 361
           R+IK K  K  D EEKR LG VL+RGE+IVS+T+
Sbjct: 49  RQIKPKAGKKTDGEEKRILGLVLVRGEHIVSMTV 82


>Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical
           protein C52E4.3 protein.
          Length = 118

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 16/51 (31%), Positives = 32/51 (62%)
 Frame = +3

Query: 156 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKK 308
           N++V +  ++++  +G  KAFD+H N++L   EN +++  ++ K    KKK
Sbjct: 39  NHQVLINCRNNKKLLGRVKAFDRHCNMVL---ENVKEMWTEVPKTGKGKKK 86


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +3

Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENS 260
           ++ RV V +++ R   G  +AFD+H+N++L + E +
Sbjct: 25  LDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEET 60


>U42436-7|AAO61428.2|  223|Caenorhabditis elegans Hypothetical
           protein C49H3.4 protein.
          Length = 223

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 144 QQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKK 308
           Q+ I  RVR  ++  R F G    FD+H NL++ D   +     K  K  T +K+
Sbjct: 120 QKRIEVRVRSAIRIDRIFEGIPTTFDEHFNLMMKDVTETVLHGRKAQKEFTNRKE 174


>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGD 248
           +  ++N  V V+  D R  +G  K FD+ +NL++ D
Sbjct: 5   LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIED 40


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +3

Query: 153 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCENSEKL--NLKIVKLQT 296
           I  ++ VI+++ +  +GT   FD ++N++L D    E      ++ KL T
Sbjct: 22  IGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDT 71


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 141 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 251
           + + ++  +RV  Q  R   G  + FD+ +N++L DC
Sbjct: 16  LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDC 52


>U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical
           protein F25B5.7c protein.
          Length = 282

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 604 PGMMGAPPGHGSWWGQDG 657
           PG MG PPGHG   G  G
Sbjct: 168 PGGMGGPPGHGGMGGPPG 185


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 604 PGMMGAPPGHGSWWGQDG 657
           PG MG PPGHG   G  G
Sbjct: 448 PGGMGGPPGHGGMGGPPG 465


>AF038608-14|AAT92087.1|  314|Caenorhabditis elegans Serpentine
           receptor, class z protein83 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/47 (40%), Positives = 30/47 (63%)
 Frame = -1

Query: 161 IINMLLHLIVFADRHFIGVIRKILLDIWKASICFSDIHLTVAFEHST 21
           I++ LLH+I     H I +IR +++ I+ A +CF+  HLT AF  +T
Sbjct: 79  ILHTLLHVI-----HEIVIIRFLIVVIFYA-LCFTMYHLTKAFYLTT 119


>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
           abnormality protein1, isoform g protein.
          Length = 1604

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 614 IIPGRRATHHGASSHLKEEQKVDHDFL 534
           I+P +  T H  +S LK+E K++HD L
Sbjct: 169 ILPAQ--TEHDEASELKKEDKIEHDIL 193


>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
           abnormality protein1, isoform f protein.
          Length = 1818

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 614 IIPGRRATHHGASSHLKEEQKVDHDFL 534
           I+P +  T H  +S LK+E K++HD L
Sbjct: 383 ILPAQ--TEHDEASELKKEDKIEHDIL 407


>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
           abnormality protein1, isoform e protein.
          Length = 1954

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 614 IIPGRRATHHGASSHLKEEQKVDHDFL 534
           I+P +  T H  +S LK+E K++HD L
Sbjct: 519 ILPAQ--TEHDEASELKKEDKIEHDIL 543


>AF067945-7|ABQ13059.1|  954|Caenorhabditis elegans Mechanosensory
           abnormality protein1, isoform i protein.
          Length = 954

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 614 IIPGRRATHHGASSHLKEEQKVDHDFL 534
           I+P +  T H  +S LK+E K++HD L
Sbjct: 568 ILPAQ--TEHDEASELKKEDKIEHDIL 592


>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
           abnormality protein1, isoform c protein.
          Length = 1167

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 614 IIPGRRATHHGASSHLKEEQKVDHDFL 534
           I+P +  T H  +S LK+E K++HD L
Sbjct: 568 ILPAQ--TEHDEASELKKEDKIEHDIL 592


>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
           abnormality protein1, isoform b protein.
          Length = 1685

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 614 IIPGRRATHHGASSHLKEEQKVDHDFL 534
           I+P +  T H  +S LK+E K++HD L
Sbjct: 568 ILPAQ--TEHDEASELKKEDKIEHDIL 592


>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
           abnormality protein1, isoform d protein.
          Length = 1995

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 614 IIPGRRATHHGASSHLKEEQKVDHDFL 534
           I+P +  T H  +S LK+E K++HD L
Sbjct: 560 ILPAQ--TEHDEASELKKEDKIEHDIL 584


>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
           abnormality protein1, isoform h protein.
          Length = 2006

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 614 IIPGRRATHHGASSHLKEEQKVDHDFL 534
           I+P +  T H  +S LK+E K++HD L
Sbjct: 572 ILPAQ--TEHDEASELKKEDKIEHDIL 596


>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
           abnormality protein1, isoform a protein.
          Length = 2007

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 614 IIPGRRATHHGASSHLKEEQKVDHDFL 534
           I+P +  T H  +S LK+E K++HD L
Sbjct: 572 ILPAQ--TEHDEASELKKEDKIEHDIL 596


>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 198 IGTFKAFDKHMNLILGDCENSEKLNLKIVKLQTEKKKELWVLFFY 332
           +GT K   K  NL   D    + +++ I+ +  EKKKE+++ FF+
Sbjct: 36  LGTCKQQKKKKNLY-SDLACRKNVDIFIIYVSFEKKKEIFLEFFH 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,108,979
Number of Sequences: 27780
Number of extensions: 245891
Number of successful extensions: 770
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)