Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060445.seq
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   2.5  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    27   3.3  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    26   5.8  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    26   5.8  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   5.8  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    25   7.7  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   7.7  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   7.7  

>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 18  QWGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIK 140
           QWGTD ++  ++  TR+ +Q++  F + E      +  ++K
Sbjct: 382 QWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQALK 422


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 354 PGSLMTHPEITRRLC*PLSINKVPSGDDNKPPI 452
           P  +M HP++ +      S+N +P  ++NK P+
Sbjct: 765 PAKVMAHPKVVQFYKQLASVNGLPIRNENKAPV 797


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 239 EGHRHHDKTLIRIVVSRSEIDLGDIKQAFLEKYGKSLETWIADDTSGDYKKALL 400
           E H   ++ L  +VVS+    LG+  +A L  +  S       D + DYK+ L+
Sbjct: 60  EDHSFPERELAALVVSKVYYYLGEYDEALL--FALSSGPKFLHDKNSDYKETLI 111


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 427 LGTLFIDKGQQSLLVISGCVISDPG 353
           LGTL  DK     +++SG V+++ G
Sbjct: 571 LGTLLFDKAPYKNVIVSGLVMAEDG 595


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 402 PLSINKVPSGDDNKPPISNTLSLIS 476
           P S+ + P    N PP+SNTL  +S
Sbjct: 706 PRSMMRDPQNLSNVPPVSNTLDQLS 730


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 440 VVIPTRDLIYRQGSTKPSCNLRMCHQRSRSP 348
           ++I  R L+YR    K   ++R+C QR   P
Sbjct: 350 IIIDDRSLLYRLTDKKFKISVRVCSQRYPYP 380


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 63  RSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAIAKCVKSKVGFFAERLYYSMK 242
           +SY QLR+   E       D  D I +  +   + G +A+  C+ S    F   LY +MK
Sbjct: 249 QSYVQLRKPLLENNLPYEIDGFDKILQCANSEADIGWIAMIHCIGSNGYAFPIHLYLNMK 308


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 607 HRLDLMYILFMEICIFCFL 663
           H   L+ ILF+ +CI C L
Sbjct: 546 HGFSLLKILFISLCILCLL 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,376
Number of Sequences: 5004
Number of extensions: 52163
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)