Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060445.seq
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0008 + 13651997-13652072,13652440-13652541,13653138-136531... 59 3e-09
09_04_0360 - 16944990-16945202,16945288-16945377,16945525-169457... 49 4e-06
08_02_0726 + 20452492-20453238,20453676-20453765,20453904-20454107 48 9e-06
06_01_0830 + 6261629-6261704,6261829-6261974,6262086-6262310,626... 46 2e-05
01_05_0009 - 17101633-17101836,17101948-17102040,17102122-171023... 46 3e-05
05_04_0139 + 18355597-18355696,18356665-18356778,18357118-183572... 44 1e-04
02_05_0782 - 31716860-31717150,31717400-31717612,31718497-317186... 43 2e-04
07_03_1563 - 27746977-27747180,27747280-27747369,27747529-277477... 40 0.001
09_03_0079 + 12142390-12142459,12142792-12143006,12143050-121432... 35 0.069
02_02_0440 - 10273032-10273259,10273423-10273461,10273875-102741... 29 3.4
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297... 29 4.5
03_05_0035 + 20075691-20075695,20075720-20076326 28 6.0
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 28 7.9
05_01_0553 + 4849535-4849553,4850727-4851913 28 7.9
>09_04_0008 +
13651997-13652072,13652440-13652541,13653138-13653142,
13653970-13654188,13654686-13654901,13654989-13655078,
13656307-13656507
Length = 302
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = +3
Query: 9 GEGQWGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAIAK 188
GE + GTDE F I RS+ + + + Y + + +E +K E SG+ E +L I +
Sbjct: 166 GEKRLGTDEKTFIRIFTERSWAHMASVASAYHHMYDRSLEKVVKSETSGNFELALLTILR 225
Query: 189 CVKSKVGFFAERLYYSMKGIG 251
C ++ +FA+ L SMKG+G
Sbjct: 226 CAENPAKYFAKVLRKSMKGMG 246
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/51 (52%), Positives = 37/51 (72%)
Frame = +2
Query: 257 DKTLIRIVVSRSEIDLGDIKQAFLEKYGKSLETWIADDTSGDYKKALLTLV 409
D TLIR+VV+R+EID+ IK + +KY KSL I +TSG+Y+ LL+LV
Sbjct: 249 DSTLIRVVVTRTEIDMQYIKAEYYKKYKKSLAEAIHSETSGNYRTFLLSLV 299
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +2
Query: 257 DKTLIRIVVSRSEIDLGDIKQAFLEKYGKSLETWIADDTSGDYKKALLTLV 409
+KT IRI RS + + A+ Y +SLE + +TSG+++ ALLT++
Sbjct: 174 EKTFIRIFTERSWAHMASVASAYHHMYDRSLEKVVKSETSGNFELALLTIL 224
Score = 35.1 bits (77), Expect = 0.052
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 275 IVVSRSEIDLGDIKQAFLEKYGKSLETWIADDTSGDYKKALLTLV 409
I+ SR+ L +KQ + K+G LE I TSGD++K LL V
Sbjct: 96 IICSRTPSQLQIMKQTYHAKFGTYLEHDIGQRTSGDHQKLLLAYV 140
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 24 GTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAI 182
GTD+S +++TR+ ++ I AEY K + ++I E SG+ +L++
Sbjct: 246 GTDDSTLIRVVVTRTEIDMQYIKAEYYKKYKKSLAEAIHSETSGNYRTFLLSL 298
>09_04_0360 -
16944990-16945202,16945288-16945377,16945525-16945746,
16945854-16946081,16946163-16946372
Length = 320
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/80 (27%), Positives = 41/80 (51%)
Frame = +3
Query: 3 ARGEGQWGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAI 182
A+ G DE++ + RS QLR F Y+ + G D ++KK G E+ + +
Sbjct: 178 AKNSGMGSVDEAVILEMFSKRSIPQLRLAFCSYKHIYGHDYTKALKKNGFGEFEQSLRVV 237
Query: 183 AKCVKSKVGFFAERLYYSMK 242
KC+ + +F++ L+ S++
Sbjct: 238 VKCIYNPSMYFSKLLHRSLQ 257
>08_02_0726 + 20452492-20453238,20453676-20453765,20453904-20454107
Length = 346
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/54 (38%), Positives = 36/54 (66%)
Frame = +2
Query: 254 HDKTLIRIVVSRSEIDLGDIKQAFLEKYGKSLETWIADDTSGDYKKALLTLVDK 415
+D TLIR+V +R+E+D+ IK + Y +SL + +TSG+Y+ LL+L+ +
Sbjct: 291 NDTTLIRVVTTRAEVDMQYIKAEYHRSYKRSLADAVHSETSGNYRTFLLSLIGR 344
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +3
Query: 132 SIKKEFSGSIEKGMLAIAKCVKSKVGFFAERLYYSMKGIG 251
++K E SG+ G+L I +C +S +FA+ L+ +MKG+G
Sbjct: 250 AVKSETSGNFGFGLLTILRCAESPAKYFAKVLHEAMKGLG 289
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +3
Query: 24 GTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAI 182
GT+++ ++ TR+ ++ I AEY + + D++ E SG+ +L++
Sbjct: 289 GTNDTTLIRVVTTRAEVDMQYIKAEYHRSYKRSLADAVHSETSGNYRTFLLSL 341
>06_01_0830 +
6261629-6261704,6261829-6261974,6262086-6262310,
6262910-6263122,6264007-6264300
Length = 317
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/51 (41%), Positives = 35/51 (68%)
Frame = +2
Query: 257 DKTLIRIVVSRSEIDLGDIKQAFLEKYGKSLETWIADDTSGDYKKALLTLV 409
+ +L RI+ +R+E+DL I +A+ ++ LE +A DTSGDY++ LL L+
Sbjct: 263 ENSLTRIITTRAEVDLKLITEAYQKRNSVPLERAVAGDTSGDYERMLLALL 313
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = +2
Query: 260 KTLIRIVVSRSEIDLGDIKQAFLEKYGKSLETWIADDTSGDYKKALLTLV 409
+ L+ I +R L ++QA+ E++ +SLE +A +GD++K L+ L+
Sbjct: 106 RVLVEIACARGPAQLFAVRQAYHERFKRSLEEDVAAHATGDFRKLLVPLI 155
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 21 WGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGML 176
WGT+E++ SIL R Q R I Y G+++ SI E SG E+ ++
Sbjct: 27 WGTNEALIISILAHRDAAQRRAIRRAYADTYGEELLRSITDEISGDFERAVI 78
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = +2
Query: 239 EGHRHHDKTLIRIVVSRSEIDLGDIKQAFLEKYGKSLETWIADDTSGDYKKALL 400
+G ++ +I I+ R I++A+ + YG+ L I D+ SGD+++A++
Sbjct: 25 QGWGTNEALIISILAHRDAAQRRAIRRAYADTYGEELLRSITDEISGDFERAVI 78
>01_05_0009 -
17101633-17101836,17101948-17102040,17102122-17102334,
17102514-17102651,17102764-17102909,17106264-17106339
Length = 289
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = +2
Query: 254 HDKTLIRIVVSRSEIDLGDIKQAFLEKYGKSLETWIADDTSGDYKKALLTLV 409
++ +L R++V +E DL IK AF ++ +LE I +DTSGDYK L+ L+
Sbjct: 234 NEDSLTRVIVLHAEKDLKGIKDAFQKRASVALEKAIGNDTSGDYKSFLMALL 285
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 21 WGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGM 173
WGTDE +L R Q +QI YE +++ ++ E SG +E+ M
Sbjct: 27 WGTDEQAVIGVLAHRDATQRKQIRLTYEENYNENLIQRLQSELSGDLERAM 77
>05_04_0139 +
18355597-18355696,18356665-18356778,18357118-18357263,
18357365-18357910,18358397-18358600
Length = 369
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = +2
Query: 257 DKTLIRIVVSRSEIDLGDIKQAFLEKYGKSLETWIADDTSGDYKKALLTLVDK*GPE 427
++ L R +VSR+E+D+ +K+ + +Y ++ + DTSG Y LLTLV GPE
Sbjct: 315 EEMLTRGIVSRAEVDMEKVKEEYKVRYNTTVTADVRGDTSGYYMNTLLTLV---GPE 368
Score = 35.1 bits (77), Expect = 0.052
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 21 WGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGML 176
WGTDE+ IL R+ Q +I YE L + + D + E SG ++
Sbjct: 73 WGTDENALIEILGHRTAAQRAEIAVAYEGLYDETLLDRLHSELSGDFRSALM 124
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +2
Query: 230 LLDEGHRHHDKTLIRIVVSRSEIDLGDIKQAFLEKYGKSLETWIADDTSGDYKKALL 400
++ G H ++RIV +RS+ L + + +++GK ++ + D GD A+L
Sbjct: 231 VVGRGQALHGDDVVRIVGTRSKAQLAVTLERYRQEHGKGIDE-VLDGRRGDQLAAVL 286
>02_05_0782 -
31716860-31717150,31717400-31717612,31718497-31718642,
31718742-31718817
Length = 241
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/51 (39%), Positives = 34/51 (66%)
Frame = +2
Query: 257 DKTLIRIVVSRSEIDLGDIKQAFLEKYGKSLETWIADDTSGDYKKALLTLV 409
+ +L RI+ +R+E+DL IK+A+ ++ LE +A DT+ DY+ LL L+
Sbjct: 188 ENSLTRIITTRAEVDLKLIKEAYQKRNSVPLERAVAKDTTRDYEDILLALL 238
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 21 WGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIE 164
WGT+E + SIL R Q R I Y G+++ ++ E G E
Sbjct: 27 WGTNEKLIISILAHRDAAQRRAIRRAYAEAYGEELLRALNDEIHGKFE 74
>07_03_1563 -
27746977-27747180,27747280-27747369,27747529-27747753,
27748002-27748115,27748218-27748423,27748757-27748832
Length = 304
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +2
Query: 254 HDKTLIRIVVSRSEIDLGDIKQAFLEKYGKSLETWIADDTSGDYKKALLTLVDK 415
++ L R++VSR+EID+ I++ + +Y ++ + DTS YK LL LV +
Sbjct: 249 YEDMLTRVIVSRAEIDMRHIREEYKVRYKTTVTRDVVGDTSFGYKGFLLALVGR 302
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/76 (32%), Positives = 35/76 (46%)
Frame = +3
Query: 24 GTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAIAKCVKSK 203
G DE + I+ TRS QLR F Y G DI + I G + + C+ S
Sbjct: 174 GEDEVV--RIVTTRSKSQLRATFQRYREDHGSDIAEDIDSHCIGQFGRMLKTAVWCLTSP 231
Query: 204 VGFFAERLYYSMKGIG 251
FAE + +S+ G+G
Sbjct: 232 EKHFAEVIRHSILGLG 247
>09_03_0079 +
12142390-12142459,12142792-12143006,12143050-12143268,
12143345-12143932
Length = 363
Score = 34.7 bits (76), Expect = 0.069
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 242 GHRHHDKTLIRIVVSRSEIDLGDIKQAFLEKYGKSLETWIADDTSGDYKKALLTLVDK*G 421
G R L+ +V +R ++ I+QA+ +Y SLE ++ TSG + LL + G
Sbjct: 119 GRRIDGDVLVEVVCTRPSGEVALIRQAYQARYSASLERDVSSRTSGSLNEVLLAFLGSSG 178
>02_02_0440 -
10273032-10273259,10273423-10273461,10273875-10274123,
10274203-10274329,10275009-10275251,10275359-10275457,
10275566-10275681,10275813-10276039,10276164-10276276,
10276402-10276522,10276641-10276855,10277042-10277225,
10277739-10278048,10278155-10278249,10278473-10278485
Length = 792
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 336 YFSRNACLMSPRSISERLTTMRMSVLS 256
YF AC+ P SERL R+SVL+
Sbjct: 519 YFLAAACIFEPNRASERLAWARVSVLA 545
>01_04_0018 +
15128174-15128316,15128445-15128544,15129573-15129758,
15129877-15129924,15130006-15130209,15130476-15130565,
15130667-15130747,15130827-15130889,15131794-15131832,
15131914-15132000,15132103-15132252,15132331-15132386,
15132493-15132775,15132989-15133132,15133233-15133451,
15133528-15133695,15133868-15133969
Length = 720
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Frame = +2
Query: 308 DIKQAFL----EKYGKSLETWIADDTSGDY--KKALLTLVDK 415
D +Q+FL + Y K +TWI +++ +Y K AL L+D+
Sbjct: 195 DFEQSFLNGTTDYYSKKAQTWILENSCPEYMLKAALFELIDR 236
>03_05_0035 + 20075691-20075695,20075720-20076326
Length = 203
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 173 ARYCQMRKEQGRFLR*APVLLDEGHRHHDK 262
AR C + KE G+F+ P L D H DK
Sbjct: 17 ARVCYVCKEPGQFIADCPYLKDGSHIKEDK 46
>10_06_0002 +
9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = -3
Query: 343 LAVLLEECLLDVP*VDLGAAHHDADERLVVVPMPFI--E*YRRSAKKPTLLFT-HLAIAS 173
+ VL E+CL DLG H D +L + P + RR A +T + IA
Sbjct: 185 ITVLAEKCLPRDTDEDLGGGHVDDMTKLTYLNEPGVLYNLKRRYALNEIYTYTGSILIAV 244
Query: 172 MPFSMLPE--NSFLIE 131
PF+ LP N +++E
Sbjct: 245 NPFTRLPHLYNEYMME 260
>05_01_0553 + 4849535-4849553,4850727-4851913
Length = 401
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 173 ARYCQMRKEQGRFLR*APVLLDEGHRHHDK 262
AR C + KE G F+ P L D H DK
Sbjct: 136 ARVCYVCKEPGHFIADCPHLKDGSHMKEDK 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,118,787
Number of Sequences: 37544
Number of extensions: 338511
Number of successful extensions: 936
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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