Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060444.seq
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    31   0.20 
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    28   1.1  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    28   1.1  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    26   5.6  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   7.4  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   9.8  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    25   9.8  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    25   9.8  
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    25   9.8  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +1

Query: 262 LDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKH 363
           + QV++  +RLRK+ + ++ E+  LL  L+ ++H
Sbjct: 363 MSQVQIECKRLRKENLFLQSERTHLLRELEELRH 396


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +1

Query: 241 ERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITR 414
           E++TEA    +E R   + +    I+   DS+   LDS+      +D   C    +TR
Sbjct: 176 EQKTEARFQSIEQRFNSIDQRFNSIDRRFDSMEQRLDSMDQKMETIDARSCRSIMLTR 233


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +1

Query: 241 ERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITR 414
           E++TEA    +E R   + +    I+   DS+   LDS+      +D   C    +TR
Sbjct: 176 EQKTEARFQSIEQRFNSIDQRFNSIDRRFDSMEQRLDSMDQKMETIDARSCRSIMLTR 233


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 301 DTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVE 453
           +T   EEE   LLST D+I     LL+  E  +D    +   +L     +E
Sbjct: 459 ETDEEEEESQYLLSTKDAINAINTLLNFQEQSEDGNVLFTRTLLQFQKVLE 509


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 507 HLIQSFLLLMVSVSAHCHLYG 445
           HLI++  L ++S   HCH  G
Sbjct: 118 HLIKTVFLQLISAVEHCHSVG 138


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 223 SRNAGAERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLD-SIKH 363
           S+N   E   +  +D  +M V+    D+  +   KDS +   D SI+H
Sbjct: 159 SKNTAEETVVDTDIDSGDMDVDSKSSDSFLLSVGKDSFMKLWDLSIQH 206


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 241 ERQTEAVLDQVEMRVERLRKDTVRIEEEKD 330
           E Q E VLD +E ++ +LR +   +E EKD
Sbjct: 410 ESQPE-VLDNLERKLRQLRVEIRALEREKD 438


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 24/88 (27%), Positives = 39/88 (44%)
 Frame = +1

Query: 130 KCISNYGGGSICIRDCVSRGFTTTPHRRILGSRNAGAERQTEAVLDQVEMRVERLRKDTV 309
           KC SNYGG S+    C  +       R +L +  A A +   A+   + + ++   +  V
Sbjct: 241 KCFSNYGGSSLRSNFCHEQAV-----RHLLYAIAASAAKYGRAIKPLLSLSIDFYFRVFV 295

Query: 310 RIEEEKDSLLSTLDSIKHSELLLDISEC 393
           +I + K  L+  L S   S L+   S C
Sbjct: 296 QI-KAKPVLVKNLQS--QSLLIYHCSGC 320


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 659 VQPRMAVSKFLSVP-ALGSGLRRARVHIGLATGMR 558
           V+   A  + +SV  AL   L+RA VH GLA G+R
Sbjct: 17  VEVEAAAPETVSVEDALKEVLKRALVHDGLARGIR 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,605
Number of Sequences: 5004
Number of extensions: 53106
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)