Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060444.seq
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990... 32 0.47
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 31 1.1
03_05_0399 - 23799830-23800090,23803448-23803558,23803685-23803693 29 2.5
12_02_0643 - 21461123-21461902 29 3.3
12_02_0635 - 21430245-21431156 29 3.3
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 29 3.3
04_04_0298 + 24228569-24228763,24229792-24229900,24230001-242300... 29 3.3
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159... 29 4.4
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 29 4.4
05_06_0156 - 26031463-26031572,26031961-26032039,26032133-260322... 28 7.7
03_05_1013 + 29680057-29680226,29682272-29682417,29683417-296834... 28 7.7
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 7.7
>12_01_0977 -
9900073-9900521,9900594-9900698,9900770-9900959,
9901035-9901093,9901297-9901688,9901770-9902059,
9902146-9903030
Length = 789
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 232 AGAERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIK 360
+G+ + A + Q+E ++E LRKD + E+DS L ++ K
Sbjct: 601 SGSSKAQAARMAQMEKQIEALRKDKAELAAERDSALKEVEDRK 643
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = +1
Query: 217 LGSRNAGAERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECD 396
L + A A + + VE R L +D E+DS + S SEL+ +IS+ +
Sbjct: 432 LSAATASAHEGVDLYCNFVETRPV-LMEDIGASAFEQDSKIQEAVSASDSELISEISDVE 490
Query: 397 KDDITRYADRILSRAMTVEVTV 462
++DIT D I + E+ V
Sbjct: 491 QEDITDKGDVIDDGFLAEELNV 512
>03_05_0399 - 23799830-23800090,23803448-23803558,23803685-23803693
Length = 126
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
Frame = +1
Query: 265 DQVEMRVERLRKDTV----RIEEEKDSLLSTLDSIK 360
D VE R+E++++D R+E+EK+S++S + +K
Sbjct: 75 DDVETRLEQMKEDAAKKLERLEQEKESIVSQMAELK 110
>12_02_0643 - 21461123-21461902
Length = 259
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +1
Query: 163 CIRDCVSRGFTTTPHRRILGSRNAGAERQTEAVLDQVEMRVERLRK-DTVRIEEEKDSLL 339
C+R R T + R A A AVL V + +E +RK + R+ E D L+
Sbjct: 43 CVRGDDGRVAATDSYSDYHSFRYAAAADLVSAVLQGVAIYLEAVRKEEAARVVELIDKLV 102
Query: 340 STLDSIKHSELL--LDISEC 393
L S + LL DI+ C
Sbjct: 103 QALTSSSAALLLAVADITSC 122
>12_02_0635 - 21430245-21431156
Length = 303
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +1
Query: 163 CIRDCVSRGFTTTPHRRILGSRNAGAERQTEAVLDQVEMRVERLRK-DTVRIEEEKDSLL 339
C+R R T + R A A AVL V + +E +RK + R+ E D L+
Sbjct: 47 CVRGDDGRVAATDSYSDYHSFRYAAAADLVSAVLQGVAIYLEAVRKEEAARVVELIDKLV 106
Query: 340 STLDSIKHSELL--LDISEC 393
L S + LL DI+ C
Sbjct: 107 QALTSSSAALLLTVADITSC 126
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +1
Query: 253 EAVLDQVEMRVERLRKDTVRIEEEK-------DSLLSTLDSIKHSELLLDISECDKDDIT 411
++ L VE R+ + KDTV E E + L LDS+++ L + D DD+
Sbjct: 1294 QSQLSNVEDRLATVMKDTVATETEASYMRNLVEELTGQLDSLRNDHEKLQLKNKDADDLL 1353
Query: 412 R 414
R
Sbjct: 1354 R 1354
>04_04_0298 +
24228569-24228763,24229792-24229900,24230001-24230069,
24230159-24230262,24230361-24230490,24231270-24231374,
24231479-24231689,24231917-24231927,24232331-24232341,
24233863-24233979,24234376-24234441,24234728-24234790,
24236577-24236652,24238003-24238064,24238573-24238658,
24238978-24239026,24239099-24239279,24239448-24239596,
24239682-24239750,24240920-24240991,24241122-24241269,
24241403-24241498,24242024-24242094,24242223-24242338,
24242453-24242498,24242611-24242781
Length = 860
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 313 IEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVEVTVRTDR 474
I +EK +L +++ IKH E++L E KDD T D +V + V +R
Sbjct: 639 IRDEKVKVLQSVNPIKHDEVVLGQYEGYKDDPTVPDDSNTPTFASVVLRVHNER 692
>08_02_1416 -
26915306-26915459,26915553-26915668,26915798-26915910,
26915995-26916130,26916219-26916338,26916472-26916648,
26916790-26916862,26916948-26917083,26917179-26918055,
26918138-26918331,26918438-26918620,26918730-26918796,
26918900-26919092,26919317-26919363,26919478-26919574,
26919663-26919790,26919905-26920009,26920763-26920879
Length = 1010
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +1
Query: 331 SLLSTLDSIKHSELLLDISECDK---DDITRYADRILSRAMT 447
S +S L S ELL S CDK DDITR A IL T
Sbjct: 433 STISPLPSKPSGELLRFFSACDKDVTDDITRRAGIILGAIFT 474
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 254 KQY*IKSRCEWRGSEKT--QSGLKKKRTPYFQL*TASNIQNCYWIYRSVIRTISHDTRTA 427
+ Y + + E EKT + G K+K P ++ T ++Q+ YW S+ HD R A
Sbjct: 647 RNYVVSTTTEANIVEKTTAKKGRKRKVMPSPEVETTDHMQDSYWSGLSLHNHPIHDLRRA 706
Query: 428 S 430
S
Sbjct: 707 S 707
>05_06_0156 -
26031463-26031572,26031961-26032039,26032133-26032261,
26032362-26032559,26032741-26032900,26032980-26033147,
26033290-26033405,26033491-26033586,26033675-26034058,
26035150-26035572,26037202-26037315,26037969-26038017,
26038103-26038262,26038345-26039014
Length = 951
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 139 SNYGGGSICIRDCVSRGFTTTPHRRILGSRNAGAERQTEAVLDQVEMRVERLRKDTV 309
S GGG+ +R G TTP GS G++R ++ + VE+ ++ DT+
Sbjct: 7 SGSGGGTTPVRPRWGSG-VTTPRSLSTGSSPRGSDRSSDDGEELVEVTLDLQEDDTI 62
>03_05_1013 +
29680057-29680226,29682272-29682417,29683417-29683493,
29683577-29683699,29683781-29683849,29684824-29684925,
29684998-29685078,29685161-29685313,29685442-29685513,
29685773-29685936,29686046-29686091,29686268-29686337,
29686509-29686594
Length = 452
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 561 AHSLRRCARTSPADRCTCHLIQSFLLLMVSVSAHCHLYGHSPG 433
AH R+C+ TC L LLL++ SA + H PG
Sbjct: 3 AHRTRQCSLLQLQPLRTCILFLLLLLLLLPCSASSSVITHLPG 45
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 253 EAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSI 357
EA+++ E +V + IEEEK+SLLS + ++
Sbjct: 140 EALINDDETKVAEIEDFLFSIEEEKNSLLSKISTL 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,606,065
Number of Sequences: 37544
Number of extensions: 406810
Number of successful extensions: 1119
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -