Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060444.seq
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    28   0.070
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    26   0.37 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.5  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   6.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 0.070
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
 Frame = +3

Query: 414 IRGPHPVPGYDRRGDSAH*PRPSAGGSSVSGDMYIDQL--------VMSVHNDAVSAHSR 569
           +R   P    +R    +  P P  G S   GD+ + Q         V+ + ++A+++H+ 
Sbjct: 344 LRMSRPSDKEEREAQKSQKPSPVTGASKSHGDLELRQRSSKSLLANVLDLEDNALASHN- 402

Query: 570 CQTYMNACTSQPGPQRGHRQEL*DGHPGLH 659
               +N   S PGP   H   +  GH  +H
Sbjct: 403 --NLLNNVYSTPGP---HHHTMGHGHSHIH 427


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +1

Query: 223 SRNAGAERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKD 402
           S NAG  +  E +L++  + V    K  + +E+EK       DSI H  L  +++   K 
Sbjct: 421 SINAGFSKIAENLLEKNWLPVHTSYKSGLNLEQEKK------DSISHYHLYTNLTALRKR 474

Query: 403 DITR 414
           D+ +
Sbjct: 475 DVLK 478


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 200 VVVNPLDTQSLMQIDPP 150
           VVV+P D  +++QID P
Sbjct: 618 VVVSPFDDSNVVQIDSP 634


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 200 VVVNPLDTQSLMQIDPP 150
           VVV+P D  +++QID P
Sbjct: 618 VVVSPFDDSNVVQIDSP 634


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 89  SISAVNKLKTKSLQFSLTSIFNYRTAN 9
           S S VNK    S   S ++++ YR AN
Sbjct: 23  SYSCVNKSMLNSHLKSHSNVYQYRCAN 49


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 618 RVGVRAETCTRSYRSGNGNAHSL 550
           RV +R + C  S R+G  N HSL
Sbjct: 44  RVLLRGQ-CISSRRNGRHNVHSL 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,051
Number of Sequences: 438
Number of extensions: 3963
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)