Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060442.seq
(657 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068719-7|AAO21425.1| 399|Caenorhabditis elegans Uncoordinated... 81 9e-16
AF068719-6|AAV58864.1| 457|Caenorhabditis elegans Uncoordinated... 81 9e-16
AF068719-5|AAC17781.1| 458|Caenorhabditis elegans Uncoordinated... 81 9e-16
Z92777-6|CAE17682.1| 353|Caenorhabditis elegans Hypothetical pr... 33 0.13
U41540-8|AAW30667.1| 571|Caenorhabditis elegans Hypothetical pr... 32 0.41
U41540-7|AAM54182.1| 930|Caenorhabditis elegans Hypothetical pr... 32 0.41
U41540-6|AAM54183.1| 934|Caenorhabditis elegans Hypothetical pr... 32 0.41
AF039047-10|AAB94229.2| 400|Caenorhabditis elegans Hypothetical... 30 1.7
Z96047-2|CAB09411.1| 566|Caenorhabditis elegans Hypothetical pr... 29 2.9
X74027-1|CAA52188.1| 566|Caenorhabditis elegans lamin protein. 29 2.9
U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl... 29 2.9
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl... 29 2.9
AL032631-1|CAB63336.1| 453|Caenorhabditis elegans Hypothetical ... 29 2.9
AL022271-1|CAA18349.1| 919|Caenorhabditis elegans Hypothetical ... 29 2.9
Z81556-9|CAB04522.1| 87|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical pr... 29 3.8
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha... 29 3.8
AF149286-1|AAF99085.1| 782|Caenorhabditis elegans KRP95 protein. 29 3.8
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha... 29 3.8
Z81587-5|CAB04706.1| 369|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z68161-6|CAA92295.2| 782|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 28 5.1
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 28 5.1
AB017106-1|BAA88837.1| 607|Caenorhabditis elegans Kinesin like ... 28 5.1
Z83123-6|CAD45601.1| 327|Caenorhabditis elegans Hypothetical pr... 28 6.7
>AF068719-7|AAO21425.1| 399|Caenorhabditis elegans Uncoordinated
protein 23, isoform b protein.
Length = 399
Score = 80.6 bits (190), Expect = 9e-16
Identities = 41/117 (35%), Positives = 65/117 (55%)
Frame = +1
Query: 247 QTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADR 426
+T LD++E++VE+LRK +E EK+ +L +L I + + ECD+++I DR
Sbjct: 229 KTIVTLDKIELQVEQLRKKAAELEMEKEQILRSLGEISVHNCMFKLEECDREEIEAITDR 288
Query: 427 ILSRAMTVEVTVRTDRDHQQEEALYQVTCTSISW*CPWHNDGMSAHSRCQTYMNACT 597
+ R TV+V V T R+ +Q++AL T H++ A QTYMNAC+
Sbjct: 289 LTKRTKTVQVVVETPRNEEQKKALEDATLMIDEVGEMMHSNIEKAKLCLQTYMNACS 345
>AF068719-6|AAV58864.1| 457|Caenorhabditis elegans Uncoordinated
protein 23, isoform c protein.
Length = 457
Score = 80.6 bits (190), Expect = 9e-16
Identities = 41/117 (35%), Positives = 65/117 (55%)
Frame = +1
Query: 247 QTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADR 426
+T LD++E++VE+LRK +E EK+ +L +L I + + ECD+++I DR
Sbjct: 287 KTIVTLDKIELQVEQLRKKAAELEMEKEQILRSLGEISVHNCMFKLEECDREEIEAITDR 346
Query: 427 ILSRAMTVEVTVRTDRDHQQEEALYQVTCTSISW*CPWHNDGMSAHSRCQTYMNACT 597
+ R TV+V V T R+ +Q++AL T H++ A QTYMNAC+
Sbjct: 347 LTKRTKTVQVVVETPRNEEQKKALEDATLMIDEVGEMMHSNIEKAKLCLQTYMNACS 403
>AF068719-5|AAC17781.1| 458|Caenorhabditis elegans Uncoordinated
protein 23, isoform a protein.
Length = 458
Score = 80.6 bits (190), Expect = 9e-16
Identities = 41/117 (35%), Positives = 65/117 (55%)
Frame = +1
Query: 247 QTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADR 426
+T LD++E++VE+LRK +E EK+ +L +L I + + ECD+++I DR
Sbjct: 288 KTIVTLDKIELQVEQLRKKAAELEMEKEQILRSLGEISVHNCMFKLEECDREEIEAITDR 347
Query: 427 ILSRAMTVEVTVRTDRDHQQEEALYQVTCTSISW*CPWHNDGMSAHSRCQTYMNACT 597
+ R TV+V V T R+ +Q++AL T H++ A QTYMNAC+
Sbjct: 348 LTKRTKTVQVVVETPRNEEQKKALEDATLMIDEVGEMMHSNIEKAKLCLQTYMNACS 404
>Z92777-6|CAE17682.1| 353|Caenorhabditis elegans Hypothetical
protein C17H1.9 protein.
Length = 353
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/98 (24%), Positives = 50/98 (51%)
Frame = +1
Query: 232 AGAERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDIT 411
A E+Q E + ++ E V+ + + V++EE++ T D +KH E + ++SE +I
Sbjct: 91 AKLEKQLEKINEKGEQDVKEVEQQRVKLEEQR-----TEDLVKHHESMANLSEKKYKEIE 145
Query: 412 RYADRILSRAMTVEVTVRTDRDHQQEEALYQVTCTSIS 525
+ R+ + +E + +Q +LYQ+ +I+
Sbjct: 146 K--QRVEQHMLKME---ELNAKSKQNTSLYQIQMKNIN 178
>U41540-8|AAW30667.1| 571|Caenorhabditis elegans Hypothetical
protein F35H12.2c protein.
Length = 571
Score = 31.9 bits (69), Expect = 0.41
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +1
Query: 241 ERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIK-HSELLLDISECDKDDITRY 417
ER+ E + ++E + R + +T+R+E E D L L + K LD++E +
Sbjct: 325 ERENEDPVLRMEKEIGRHQANTLRLERENDDLAHELVTSKIELRRKLDVAEDQIETSANA 384
Query: 418 ADRILSRAMTV-EVTVRTDRDHQQEEALYQ 504
+R+ + M + E R+++Q + +Y+
Sbjct: 385 IERLTRQNMDILEENKNLMREYEQIKEMYR 414
>U41540-7|AAM54182.1| 930|Caenorhabditis elegans Hypothetical
protein F35H12.2a protein.
Length = 930
Score = 31.9 bits (69), Expect = 0.41
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +1
Query: 241 ERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIK-HSELLLDISECDKDDITRY 417
ER+ E + ++E + R + +T+R+E E D L L + K LD++E +
Sbjct: 684 ERENEDPVLRMEKEIGRHQANTLRLERENDDLAHELVTSKIELRRKLDVAEDQIETSANA 743
Query: 418 ADRILSRAMTV-EVTVRTDRDHQQEEALYQ 504
+R+ + M + E R+++Q + +Y+
Sbjct: 744 IERLTRQNMDILEENKNLMREYEQIKEMYR 773
>U41540-6|AAM54183.1| 934|Caenorhabditis elegans Hypothetical
protein F35H12.2b protein.
Length = 934
Score = 31.9 bits (69), Expect = 0.41
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +1
Query: 241 ERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIK-HSELLLDISECDKDDITRY 417
ER+ E + ++E + R + +T+R+E E D L L + K LD++E +
Sbjct: 688 ERENEDPVLRMEKEIGRHQANTLRLERENDDLAHELVTSKIELRRKLDVAEDQIETSANA 747
Query: 418 ADRILSRAMTV-EVTVRTDRDHQQEEALYQ 504
+R+ + M + E R+++Q + +Y+
Sbjct: 748 IERLTRQNMDILEENKNLMREYEQIKEMYR 777
>AF039047-10|AAB94229.2| 400|Caenorhabditis elegans Hypothetical
protein K11D12.9 protein.
Length = 400
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +1
Query: 232 AGAERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKH--SELLLDISECDKDD 405
A ER+ E +V+ + L+ +E EK+ LS + +K + D+ +C KD+
Sbjct: 118 ATLEREKERDRKEVDSQFTILKNRINHLENEKEQCLSEVQELKRLLEDSEQDLKDC-KDE 176
Query: 406 ITRYADRILSRAMTVE-VTVRTDRDHQQ 486
+ R + + A ++ +T++ R Q+
Sbjct: 177 MNRLMEERVETADALDKLTIQNYRQQQE 204
>Z96047-2|CAB09411.1| 566|Caenorhabditis elegans Hypothetical
protein DY3.2 protein.
Length = 566
Score = 29.1 bits (62), Expect = 2.9
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Frame = +1
Query: 229 NAGAERQTEAVLDQVEM--RVERLRKDTVRIEEEKDSLLSTLDSIKHS-ELLLDISECDK 399
NA ERQ EAV + + + RV L + + L S LD++K S + LD +
Sbjct: 286 NAARERQEEAVSEAIHLRARVRDLETSSSGNASLIERLRSELDTLKRSFQEKLDDKDARI 345
Query: 400 DDITRYADRILSRAM-TVEVTVRTDRDHQQEEALYQ 504
++ + +R++S ++V ++ D + + +AL +
Sbjct: 346 AELNQEIERMMSEFHDLLDVKIQLDAELKTYQALLE 381
>X74027-1|CAA52188.1| 566|Caenorhabditis elegans lamin protein.
Length = 566
Score = 29.1 bits (62), Expect = 2.9
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Frame = +1
Query: 229 NAGAERQTEAVLDQVEM--RVERLRKDTVRIEEEKDSLLSTLDSIKHS-ELLLDISECDK 399
NA ERQ EAV + + + RV L + + L S LD++K S + LD +
Sbjct: 286 NAARERQEEAVSEAIHLRARVRDLETSSSGNASLIERLRSELDTLKRSFQEKLDDKDARI 345
Query: 400 DDITRYADRILSRAM-TVEVTVRTDRDHQQEEALYQ 504
++ + +R++S ++V ++ D + + +AL +
Sbjct: 346 AELNQEIERMMSEFHDLLDVKIQLDAELKTYQALLE 381
>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform b protein.
Length = 1590
Score = 29.1 bits (62), Expect = 2.9
Identities = 29/98 (29%), Positives = 40/98 (40%)
Frame = +1
Query: 193 TTTPHRRILGSRNAGAERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSEL 372
TT P ++ S + TE V +QV R E KD VR E++D D
Sbjct: 456 TTPPPPKMTESEIQALKVATEKV-NQVIARREDSEKD-VRHREDRDDYDRRRDDRDRRSR 513
Query: 373 LLDISECDKDDITRYADRILSRAMTVEVTVRTDRDHQQ 486
D D+ R D +R EVT R DR+ ++
Sbjct: 514 KTDSERNDQRGRQREDDERRAREREREVTKRHDREREE 551
>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform a protein.
Length = 1604
Score = 29.1 bits (62), Expect = 2.9
Identities = 29/98 (29%), Positives = 40/98 (40%)
Frame = +1
Query: 193 TTTPHRRILGSRNAGAERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSEL 372
TT P ++ S + TE V +QV R E KD VR E++D D
Sbjct: 470 TTPPPPKMTESEIQALKVATEKV-NQVIARREDSEKD-VRHREDRDDYDRRRDDRDRRSR 527
Query: 373 LLDISECDKDDITRYADRILSRAMTVEVTVRTDRDHQQ 486
D D+ R D +R EVT R DR+ ++
Sbjct: 528 KTDSERNDQRGRQREDDERRAREREREVTKRHDREREE 565
>AL032631-1|CAB63336.1| 453|Caenorhabditis elegans Hypothetical
protein Y106G6H.1 protein.
Length = 453
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 163 CIRDCVSRGFTTTPHRRILGSRNAGAERQTEAVLDQVEMRVERLRKDTVRIEEEKDSL 336
C+R+ F TP R L S+ Q +A L+ + +V++ +KD +E EK +L
Sbjct: 393 CLRELCQEYFKDTPQTRWLCSQIPDRPEQADAFLNIRQTKVKKEKKD-YHMEFEKRNL 449
>AL022271-1|CAA18349.1| 919|Caenorhabditis elegans Hypothetical
protein F32F2.1 protein.
Length = 919
Score = 29.1 bits (62), Expect = 2.9
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Frame = +1
Query: 181 SRGFTTTPHRRILGSRNAGAERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIK 360
+ TP R S+ +G ++ +LDQ E + ++ IEE+K +LL S K
Sbjct: 40 ANSINATPVMRRRRSQMSGVRQRNYRILDQNESKYILQQQSAAAIEEKKGTLLRRKSSKK 99
Query: 361 HSELLLDI-------------SECDKDDITRY--ADRILSRAMTVEVTVRTDRDHQQEEA 495
E L I + C K+ T Y + R S + +V TDR ++E A
Sbjct: 100 LIEPLPMIITPPVLMARTQCCAVCYKEKSTGYSVSSRTQSYPLEAMSSVTTDRSTEEETA 159
Query: 496 LYQVTCTSISW 528
+S +
Sbjct: 160 RLSFVSSSTGY 170
>Z81556-9|CAB04522.1| 87|Caenorhabditis elegans Hypothetical
protein F58G1.9 protein.
Length = 87
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 331 SLLSTLDSIKHSELLLDISEC 393
++LSTLDS+ HSE L + +C
Sbjct: 16 AILSTLDSLLHSETALSVFDC 36
>Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical
protein K07C5.4 protein.
Length = 486
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 244 RQTEAVLDQVEMRV-ERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYA 420
R A+LD+ +M E L + + I + + + + + +DIS+ D ++I R+A
Sbjct: 215 RLAVAILDRNKMAENENLENEILEILDNDSEKTAQIIEAARTSMGMDISDLDLENIKRFA 274
Query: 421 DRILS 435
R+ S
Sbjct: 275 ARVSS 279
>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase 2
protein.
Length = 1668
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 292 LRKDTVR-IEEEKDSLLSTLDSIKHSEL 372
LRK T+R +E +DSL TLD+ K E+
Sbjct: 1583 LRKGTIRALEHRRDSLFGTLDNRKDDEV 1610
>AF149286-1|AAF99085.1| 782|Caenorhabditis elegans KRP95 protein.
Length = 782
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/69 (28%), Positives = 36/69 (52%)
Frame = +1
Query: 223 SRNAGAERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKD 402
SR+ + +A ++E +E ++KD I+ EKD L+ + KH D+ E ++
Sbjct: 379 SRDGATQSFYDAERTKLEDDIEAIQKDDSLIKHEKDRLIREIQE-KH-----DLLEKERI 432
Query: 403 DITRYADRI 429
+ R A+RI
Sbjct: 433 EQARVAERI 441
>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
protein 2 protein.
Length = 1668
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 292 LRKDTVR-IEEEKDSLLSTLDSIKHSEL 372
LRK T+R +E +DSL TLD+ K E+
Sbjct: 1583 LRKGTIRALEHRRDSLFGTLDNRKDDEV 1610
>Z81587-5|CAB04706.1| 369|Caenorhabditis elegans Hypothetical
protein T06G6.7 protein.
Length = 369
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 63 NKVFTIFFDVNIQLPHCKPRA 1
N V + FF++N+Q HCKP A
Sbjct: 69 NMVRSEFFEINLQGTHCKPPA 89
>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical
protein F20C5.2b protein.
Length = 1130
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/69 (28%), Positives = 36/69 (52%)
Frame = +1
Query: 223 SRNAGAERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKD 402
SR+ + +A ++E +E ++KD I+ EKD L+ + KH D+ E ++
Sbjct: 365 SRDGATQSFYDAERAKLEDDIEAIQKDDSLIKHEKDRLIREIQE-KH-----DLLEKERI 418
Query: 403 DITRYADRI 429
+ R A+RI
Sbjct: 419 EQARVAERI 427
>Z68161-6|CAA92295.2| 782|Caenorhabditis elegans Hypothetical
protein F20C5.2a protein.
Length = 782
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/69 (28%), Positives = 36/69 (52%)
Frame = +1
Query: 223 SRNAGAERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKD 402
SR+ + +A ++E +E ++KD I+ EKD L+ + KH D+ E ++
Sbjct: 379 SRDGATQSFYDAERAKLEDDIEAIQKDDSLIKHEKDRLIREIQE-KH-----DLLEKERI 432
Query: 403 DITRYADRI 429
+ R A+RI
Sbjct: 433 EQARVAERI 441
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = +1
Query: 268 QVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMT 447
+ + R+E R+ +RIE+ + L S K E LD K+ + R+ +M
Sbjct: 11 ETQRRIEYTRQKVMRIEQMNEQLRKLSKSNKGREEKLDRLLKRKESLELDVARLTDASMR 70
Query: 448 VEVTVRTDRDHQQEEAL 498
E V + H EE +
Sbjct: 71 AEPEVGAELLHSIEEPM 87
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = +1
Query: 268 QVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMT 447
+ + R+E R+ +RIE+ + L S K E LD K+ + R+ +M
Sbjct: 11 ETQRRIEYTRQKVMRIEQMNEQLRKLSKSNKGREEKLDRLLKRKESLELDVARLTDASMR 70
Query: 448 VEVTVRTDRDHQQEEAL 498
E V + H EE +
Sbjct: 71 AEPEVGAELLHSIEEPM 87
>AB017106-1|BAA88837.1| 607|Caenorhabditis elegans Kinesin like
protein (klp-11) protein.
Length = 607
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/69 (28%), Positives = 36/69 (52%)
Frame = +1
Query: 223 SRNAGAERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKD 402
SR+ + +A ++E +E ++KD I+ EKD L+ + KH D+ E ++
Sbjct: 328 SRDGATQSFYDAERAKLEDDIEAIQKDDSLIKHEKDRLIREIQE-KH-----DLLEKERI 381
Query: 403 DITRYADRI 429
+ R A+RI
Sbjct: 382 EQARVAERI 390
>Z83123-6|CAD45601.1| 327|Caenorhabditis elegans Hypothetical
protein T04A11.12 protein.
Length = 327
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -1
Query: 513 TCHLIQSFLLLMVSVSAHCHLYGHSPGQDAVRVSCDIVLITLRYI 379
TC +I +F+LL++ + + C L + + +V + L T I
Sbjct: 219 TCCIITNFILLLLLIKSRCLLNAQTRSMHSYKVEVSLSLTTFSMI 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,951,339
Number of Sequences: 27780
Number of extensions: 323482
Number of successful extensions: 960
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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