Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060442.seq
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27130.1 68418.m03238 MADS-box family protein various predict...    34   0.096
At4g09960.1 68417.m01629 MADS-box protein (AGL11)                      30   1.2  
At1g29180.1 68414.m03570 DC1 domain-containing protein contains ...    29   2.7  
At5g10920.1 68418.m01267 argininosuccinate lyase, putative / arg...    28   4.8  
At3g52860.1 68416.m05825 expressed protein                             28   4.8  
At5g64430.1 68418.m08093 octicosapeptide/Phox/Bem1p (PB1) domain...    28   6.3  
At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical ...    28   6.3  
At1g67230.1 68414.m07652 expressed protein                             28   6.3  
At4g14410.2 68417.m02224 basic helix-loop-helix (bHLH) family pr...    27   8.3  
At4g14410.1 68417.m02223 basic helix-loop-helix (bHLH) family pr...    27   8.3  
At3g07530.1 68416.m00899 expressed protein ; expression supporte...    27   8.3  

>At5g27130.1 68418.m03238 MADS-box family protein various predicted
           MADS box proteins, Arabidopsis thaliana
          Length = 306

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +1

Query: 262 LDQVEMRVERLRKDTVRI--EEEKDSLLSTLDSIKHSELLLDISECDKDDITRYA 420
           L  +E R++R++K  +    +EEK  L+S+ D   +S   LD+ +CD    ++ A
Sbjct: 120 LSIIEDRLQRMKKHVMACLEKEEKSQLVSSFDQNPNSTCSLDVEDCDGSSYSQIA 174


>At4g09960.1 68417.m01629 MADS-box protein (AGL11)
          Length = 230

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +1

Query: 298 KDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVEVTVRTDRD 477
           K+  ++E   +  +S + S KH  LL++I    K +I    + I  R    EV       
Sbjct: 122 KELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHH 181

Query: 478 HQ 483
           HQ
Sbjct: 182 HQ 183


>At1g29180.1 68414.m03570 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 444

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +1

Query: 136 ISNYGGGSICIRDCVSRGFTTTPHRRILGSRNAGAERQTEAVLDQVEMRVE 288
           I N  GG  CI+D  S G     H R    RN     + E VL+++E  VE
Sbjct: 97  IDNDFGGYSCIKDDCSYG----AHSRCATQRNVWDGIELEGVLEEIEEEVE 143


>At5g10920.1 68418.m01267 argininosuccinate lyase, putative /
           arginosuccinase, putative similar to argininosuccinate
           lyase [Nostoc punctiforme] GI:7672743; contains Pfam
           profile PF00206: Lyase
          Length = 517

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +1

Query: 244 RQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYAD 423
           R  E+V ++VE   E +  D V  +++     +    + H  L+ D    DKD I R  D
Sbjct: 64  RFEESVTEKVEKFTESISFDKVLYKQDIMGSKAHASMLAHQGLITD---SDKDSILRGLD 120

Query: 424 RILSRAMTVEVTVRTDRD--HQQEEA 495
            I  +    +   RTDR+  H   EA
Sbjct: 121 DIERQIEANKFEWRTDREDVHMNIEA 146


>At3g52860.1 68416.m05825 expressed protein 
          Length = 156

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 265 DQVEMRVERLRKDTVRIEEEKDSLLSTLDSI--KHSELLLDISECDKDDITRYADRI 429
           D+   R E L+KD   +EEE    L T D +  KH  L  +  +  K+ I ++ D +
Sbjct: 101 DRAPSRAESLKKDIAVMEEE----LKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153


>At5g64430.1 68418.m08093 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein contains Pfam profile PF00564:
           PB1 domain
          Length = 513

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 251 VCLSAPAFLEPRIRR*GVVVNPLDTQSLMQ 162
           V L  P F +PR+ +   VVNP++ Q  MQ
Sbjct: 220 VALEPPLFNDPRVIQPDHVVNPMEIQRQMQ 249


>At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical to
           WAVE-DAMPENED2 [Arabidopsis thaliana] GI:28453880
          Length = 293

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 253 EAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIK 360
           +  +DQ E+  E   +D ++IE+E D L   L  IK
Sbjct: 232 DVCIDQYEIFEEHQGEDGIKIEQEADILTKALTQIK 267


>At1g67230.1 68414.m07652 expressed protein
          Length = 1132

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +1

Query: 196 TTPHRRILGSRNAGAERQTEAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELL 375
           T  + R + S+ A +ER    +L  +EMR  +L  D   I EEK+  L     +   E  
Sbjct: 588 TMEYERSMLSKKAESERSQ--LLHDIEMRKRKLESDMQTILEEKERELQAKKKLFEEERE 645

Query: 376 LDIS 387
            ++S
Sbjct: 646 KELS 649


>At4g14410.2 68417.m02224 basic helix-loop-helix (bHLH) family
           protein
          Length = 277

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 148 GGGSICIRDCVSRGFTTTPHRRILGSRNAGAERQTE--AVLDQVEMRVERLRKDTVRIEE 321
           GGG+   R+ + R         +      G   +T+  A+LD     + +LR + +++EE
Sbjct: 125 GGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEE 184

Query: 322 EKDSLLSTLDSIK 360
               LL  + S+K
Sbjct: 185 TNQKLLEEIKSLK 197


>At4g14410.1 68417.m02223 basic helix-loop-helix (bHLH) family
           protein
          Length = 283

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 148 GGGSICIRDCVSRGFTTTPHRRILGSRNAGAERQTE--AVLDQVEMRVERLRKDTVRIEE 321
           GGG+   R+ + R         +      G   +T+  A+LD     + +LR + +++EE
Sbjct: 131 GGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEE 190

Query: 322 EKDSLLSTLDSIK 360
               LL  + S+K
Sbjct: 191 TNQKLLEEIKSLK 203


>At3g07530.1 68416.m00899 expressed protein ; expression supported
           by MPSS
          Length = 699

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 313 IEEEKDSLLSTLDSIKHSELLLDISEC 393
           I + KDSLL+T DS++  E L  +  C
Sbjct: 310 ISDNKDSLLNTEDSLEEMEKLAFVCSC 336


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,985,787
Number of Sequences: 28952
Number of extensions: 296289
Number of successful extensions: 726
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)