Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060440.seq
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    24   1.0  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   2.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.3  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   9.3  

>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 366 AGFLGSTATRTTGDTLNFITFMLWAFLKVVMVPVLTK 256
           +GF     T    D  N++TF    F+ V++  +L K
Sbjct: 32  SGFENFVKTYLVSDFENYVTFFCSLFIVVILKLILAK 68


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 365 ADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAG 466
           AD  KLV GL    +S  +    N + G  IVAG
Sbjct: 255 ADPGKLVLGLGVYGRSFTLASASNNKLGAPIVAG 288


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 329 PVVRVAVEPKNPADLPKLV 385
           PV+R+ V   NP D   L+
Sbjct: 480 PVMRICVSAWNPKDCDPLI 498


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 236 SCWSRSVLVKTGTITTFKNAHNMK 307
           S W + VL ++G  T+   AH+ +
Sbjct: 267 SRWIKMVLAESGVDTSIYTAHSTR 290


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,879
Number of Sequences: 336
Number of extensions: 3543
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)