Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060440.seq
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0662 + 30987187-30987277,30987825-30990214 157 8e-39
04_01_0103 + 1082077-1082167,1083037-1085477 149 2e-36
02_04_0017 + 18937774-18937864,18938505-18940945 149 2e-36
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 140 7e-34
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 105 4e-23
03_05_0511 + 25056018-25059107 94 1e-19
02_04_0148 - 20198407-20201424 91 7e-19
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 66 3e-11
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 56 3e-08
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 42 3e-04
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 32 0.48
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483... 28 6.0
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771... 28 6.0
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 6.0
07_01_0156 + 1106058-1107596 28 7.9
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 157 bits (381), Expect = 8e-39
Identities = 83/144 (57%), Positives = 105/144 (72%), Gaps = 3/144 (2%)
Frame = +2
Query: 257 LVKTGTITTFK--NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC 430
+ K T+T K +A +K MKFSVSPVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C
Sbjct: 457 ITKNATLTNEKEVDACPIKAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLC 516
Query: 431 INEESGEHIVAGAGELHLEICLKDLEXTMLAFQSRSLTLSCRTVRP*LRNRN-QLCLSKS 607
EESGEHI+AGAGELHLEICLKDL+ + +++ + R + ++ + +SKS
Sbjct: 517 TVEESGEHIIAGAGELHLEICLKDLQEDFMGGAEITVSPPVVSFRETVLEKSCRTVMSKS 576
Query: 608 PNKHNRLFMKAQPMPDGLPEDIXE 679
PNKHNRL+M+A+PM +GLPE I E
Sbjct: 577 PNKHNRLYMEARPMEEGLPEAIDE 600
Score = 125 bits (302), Expect = 3e-29
Identities = 53/82 (64%), Positives = 67/82 (81%)
Frame = +3
Query: 9 VYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 188
+YVSKM+P SDKGRFYAFGRVFSG+V TG K RIMGPN+ PG+K+DLY K +QRT++ MG
Sbjct: 374 LYVSKMIPASDKGRFYAFGRVFSGRVATGMKVRIMGPNYAPGQKKDLYVKNVQRTVIWMG 433
Query: 189 RYVEAIEDVPSGNICGLVGVDQ 254
+ E++E VP GN +VG+DQ
Sbjct: 434 KKQESVEGVPCGNTVAMVGLDQ 455
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 149 bits (362), Expect = 2e-36
Identities = 79/144 (54%), Positives = 102/144 (70%), Gaps = 3/144 (2%)
Frame = +2
Query: 257 LVKTGTITTFKNAHN--MKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC 430
+ K T+T K A ++ MKFSVSPVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C
Sbjct: 461 ITKNATLTNEKEADACPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLC 520
Query: 431 INEESGEHIVAGAGELHLEICLKDLEXTMLAFQSRSLTLSCRTVRP*LRNRN-QLCLSKS 607
EESGEHI+AGAGELHLEICLKDL+ + ++ + R + ++ + +SKS
Sbjct: 521 TIEESGEHIIAGAGELHLEICLKDLQEDFMGGAEIIVSPPVVSFRETVLEKSCRTVMSKS 580
Query: 608 PNKHNRLFMKAQPMPDGLPEDIXE 679
PNKHNRL+M+A+P+ +GL E I +
Sbjct: 581 PNKHNRLYMEARPLEEGLAEAIDD 604
Score = 127 bits (306), Expect = 9e-30
Identities = 53/82 (64%), Positives = 69/82 (84%)
Frame = +3
Query: 9 VYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 188
+YVSKM+P SDKGRF+AFGRVFSG+V TG K RIMGPN+ PG+K+DLY K++QRT++ MG
Sbjct: 378 LYVSKMIPASDKGRFFAFGRVFSGRVATGMKVRIMGPNYVPGQKKDLYVKSVQRTVIWMG 437
Query: 189 RYVEAIEDVPSGNICGLVGVDQ 254
+ E++EDVP GN +VG+DQ
Sbjct: 438 KKQESVEDVPCGNTVAMVGLDQ 459
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 149 bits (361), Expect = 2e-36
Identities = 79/144 (54%), Positives = 103/144 (71%), Gaps = 3/144 (2%)
Frame = +2
Query: 257 LVKTGTITTFK--NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC 430
+ K T+T K +A ++ MKFSVSPVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C
Sbjct: 461 ITKNATLTNEKESDACPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLC 520
Query: 431 INEESGEHIVAGAGELHLEICLKDLEXTMLAFQSRSLTLSCRTVRP*LRNRN-QLCLSKS 607
EESGEHI+AGAGELHLEICLKDL+ + ++ + R + ++ + +SKS
Sbjct: 521 TIEESGEHIIAGAGELHLEICLKDLQEDFMGGAEIIVSPPVVSFRETVLEKSCRTVMSKS 580
Query: 608 PNKHNRLFMKAQPMPDGLPEDIXE 679
PNKHNRL+M+A+P+ +GL E I +
Sbjct: 581 PNKHNRLYMEARPLEEGLAEAIDD 604
Score = 127 bits (306), Expect = 9e-30
Identities = 53/82 (64%), Positives = 69/82 (84%)
Frame = +3
Query: 9 VYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 188
+YVSKM+P SDKGRF+AFGRVFSG+V TG K RIMGPN+ PG+K+DLY K++QRT++ MG
Sbjct: 378 LYVSKMIPASDKGRFFAFGRVFSGRVATGMKVRIMGPNYVPGQKKDLYVKSVQRTVIWMG 437
Query: 189 RYVEAIEDVPSGNICGLVGVDQ 254
+ E++EDVP GN +VG+DQ
Sbjct: 438 KKQESVEDVPCGNTVAMVGLDQ 459
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 140 bits (340), Expect = 7e-34
Identities = 72/134 (53%), Positives = 95/134 (70%), Gaps = 3/134 (2%)
Frame = +2
Query: 257 LVKTGTITTFK--NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC 430
+ K T+T K +AH +K MKFSVSPVVR +V KN ++LPKLVEGLKRLAKSDP+V C
Sbjct: 463 ITKNATLTDEKAVDAHPIKAMKFSVSPVVRKSVACKNASELPKLVEGLKRLAKSDPLVVC 522
Query: 431 INEESGEHIVAGAGELHLEICLKDLEXTMLAFQSRSLTLSCRTVRP*L-RNRNQLCLSKS 607
EESGEH++AG G+LHLEIC+KDL+ + + T R + +N + +SKS
Sbjct: 523 TIEESGEHVIAGVGQLHLEICIKDLQEDFMGGAEIIVGPPIITYRETVTKNSCRTVMSKS 582
Query: 608 PNKHNRLFMKAQPM 649
PNKHNRL+M+A+P+
Sbjct: 583 PNKHNRLYMEARPL 596
Score = 128 bits (310), Expect = 3e-30
Identities = 55/82 (67%), Positives = 68/82 (82%)
Frame = +3
Query: 9 VYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 188
VYVSKM+P SDKGRF+AFGRVFSG V TG K RIMGPNF PG+K+DLY KT+QRT++ MG
Sbjct: 380 VYVSKMIPASDKGRFFAFGRVFSGTVATGNKVRIMGPNFVPGEKKDLYVKTVQRTVIWMG 439
Query: 189 RYVEAIEDVPSGNICGLVGVDQ 254
+ E+++DVP GN +VG+DQ
Sbjct: 440 KKQESVDDVPCGNTVAMVGLDQ 461
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 105 bits (251), Expect = 4e-23
Identities = 54/145 (37%), Positives = 88/145 (60%), Gaps = 6/145 (4%)
Frame = +2
Query: 257 LVKTGTITTFK---NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ 427
++KT TI K + + + ++F+ PVV++A EP NP++LPK+VEGL++++KS P+
Sbjct: 583 IMKTATICPMKMDEDVYIFRPLRFNTLPVVKIAAEPLNPSELPKMVEGLRKISKSYPLAV 642
Query: 428 CINEESGEHIVAGAGELHLEICLKDLEXTMLAFQSR---SLTLSCRTVRP*LRNRNQLCL 598
EESGEH + G GEL+L+ +KDL + + + C TV + + C
Sbjct: 643 TKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVTFCETV---VDTSSMKCF 699
Query: 599 SKSPNKHNRLFMKAQPMPDGLPEDI 673
+++PNK N++ M A+P+ GL EDI
Sbjct: 700 AETPNKRNKITMVAEPLEKGLAEDI 724
Score = 64.1 bits (149), Expect = 1e-10
Identities = 31/81 (38%), Positives = 47/81 (58%)
Frame = +3
Query: 9 VYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 188
V V+K+ P SD F AFGRV+SG + TGQ R++G ++P +ED+ K + + +
Sbjct: 500 VNVTKLYPKSDCSVFDAFGRVYSGTIQTGQTVRVLGEGYSPDDEEDMTVKEVTKLWVYQA 559
Query: 189 RYVEAIEDVPSGNICGLVGVD 251
RY I P+G+ + GVD
Sbjct: 560 RYRVPISKAPAGSWVLIEGVD 580
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 93.9 bits (223), Expect = 1e-19
Identities = 42/84 (50%), Positives = 60/84 (71%)
Frame = +2
Query: 257 LVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 436
++K+ T+++ KN M F VSP+++VA+EP NPADL LV+GLK L ++DP V+
Sbjct: 512 ILKSATLSSTKNCWPFSSMMFQVSPMLKVAIEPSNPADLGALVKGLKLLNRADPFVEYTV 571
Query: 437 EESGEHIVAGAGELHLEICLKDLE 508
+ GEH++A AGE+HLE C KDLE
Sbjct: 572 SQRGEHVLAAAGEIHLERCKKDLE 595
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 51 FYAFGRVFSGKVVTGQKARIMGPNFTPGKKE----DLYEKTIQRTILMMGRYVEAIEDVP 218
F AF RVF G + GQK ++ P + P K E + E +Q M+G+ + + V
Sbjct: 439 FMAFARVFCGVLRAGQKVFVLSPLYDPMKGEAMQKHVQEVELQYLYEMLGQGLRPVSSVC 498
Query: 219 SGNICGLVGV 248
+GN+ + G+
Sbjct: 499 AGNVVAIQGL 508
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 91.1 bits (216), Expect = 7e-19
Identities = 39/84 (46%), Positives = 60/84 (71%)
Frame = +2
Query: 257 LVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 436
++K T+++ KN M F VSP+++VA+EP NP+DL LV+GLK L ++DP ++
Sbjct: 492 VLKNATLSSTKNCQPFSGMMFQVSPMLKVAIEPSNPSDLGALVKGLKLLNQADPFIEYTV 551
Query: 437 EESGEHIVAGAGELHLEICLKDLE 508
E GEH++A AGE+HLE C+K+L+
Sbjct: 552 SERGEHVLAAAGEIHLEHCIKNLQ 575
>05_05_0156 +
22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 65.7 bits (153), Expect = 3e-11
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +3
Query: 9 VYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 188
+YVSKM KGR++A GRVFSGKV +G + + P++ G+++DLY K I+ +++ +G
Sbjct: 557 LYVSKMTLALGKGRYFALGRVFSGKVTSGMNVQFLSPSYGIGERKDLYIKCIKSSLIWIG 616
Query: 189 RYVEAIEDVPSGNICG 236
E +E +I G
Sbjct: 617 DKRELVEGSSCSSIPG 632
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +2
Query: 329 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ-CINEESGEHIVAGAGELHLEICLKDL 505
PV++VA+EPK AD K+ GL +LA+ DP +EE+ + ++ G GELHL+I + L
Sbjct: 457 PVIKVAIEPKTKADADKMATGLIKLAQEDPSFHFSRDEETNQTVIEGMGELHLDIIVDRL 516
Query: 506 E 508
+
Sbjct: 517 K 517
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +2
Query: 329 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 490
PV+ +AV P + + + L R K DP + ++ ESGE I++G GELHL+I
Sbjct: 477 PVMSLAVSPISKDSGGQFSKALNRFQKEDPTFRVGLDPESGETIISGMGELHLDI 531
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 471 PAPATMCSPDSSLIHCTMGSDLARRLRPSTSLGRSAGFLGSTATRTT 331
P+P+ D S C GS + + P+T+ AG S T +T
Sbjct: 342 PSPSEAIGTDGSSTSCGTGSSVTNAIAPATTTSTFAGLFASVTTSST 388
>11_03_0135 -
10547460-10547558,10547926-10548086,10548183-10548306,
10548566-10548729,10549803-10549883,10549973-10550097,
10550200-10550430,10550566-10550588,10551055-10551539,
10551678-10552075,10552903-10552988,10553120-10553397,
10553494-10553714,10553927-10554018,10554148-10554213,
10555855-10556022
Length = 933
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = -1
Query: 576 LSYGLTVRHDRVRLLDWNASMVXSRSLRQISRWSS-PAPATMCSPDSSLIHCTMGSDLAR 400
+S G V+ V D N S + S+S ++ + P+ T + C GS+ A
Sbjct: 152 ISVGSKVKAANVSSKDLNVSNISSKSTKEDAEEGIVPSGCTSTGKEEDGRSCIGGSEAAN 211
Query: 399 RLRPSTSLGRSAGF 358
+ TS GR+ F
Sbjct: 212 KNEEQTSSGRNDDF 225
>06_01_0993 +
7710016-7710977,7711081-7711316,7711422-7711501,
7711977-7712072,7712995-7713892,7713983-7714093,
7714657-7714751
Length = 825
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = -1
Query: 519 SMVXSRSLRQISRWSSPAPATMCSPDSSLIHCTMGSDLARRLRPSTSLGRSA 364
S V S +L++ ++S P+ MCS +S HCT D R+RP +L R A
Sbjct: 514 STVVSMALKR-EQFSIPS---MCS-ESFSSHCTKSQDSVVRMRPDDTLVRRA 560
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = -1
Query: 489 ISRWSSPAPATMCSPDSSLIHCTMGSDLARRLRPSTSLGRSAGFLGSTATRTTGDTLNFI 310
++ W+ PAP T+ P++S + ++ SL G T T GD L ++
Sbjct: 1040 VAEWT-PAPETVSIPEASTDPSQLPHTAHWVMQFDGSLSLQGAGAGVTLTSPNGDVLRYL 1098
Query: 309 TFMLWAFLKVV 277
W+ + V
Sbjct: 1099 ATPSWSLTRSV 1109
>07_01_0156 + 1106058-1107596
Length = 512
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 586 VPIPQLRSHGTTRQGQTS*LECKHGXLKILKT 491
VP+P+ R GT +G+ S +C H + ++ T
Sbjct: 331 VPVPEFREQGTIVKGKPSLKKCPHMKVDLVYT 362
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,897,059
Number of Sequences: 37544
Number of extensions: 418831
Number of successful extensions: 1187
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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