Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060440.seq
(681 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 195 2e-50
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 9e-22
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.058
SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.070
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 33 0.16
SB_24564| Best HMM Match : Rad50_zn_hook (HMM E-Value=6.6) 30 1.5
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 30 1.5
SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 2.6
SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6) 29 3.5
SB_8941| Best HMM Match : VWA (HMM E-Value=0) 28 6.1
SB_44879| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_28265| Best HMM Match : Ank (HMM E-Value=6.3e-20) 28 6.1
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 195 bits (476), Expect = 2e-50
Identities = 99/143 (69%), Positives = 111/143 (77%), Gaps = 2/143 (1%)
Frame = +2
Query: 257 LVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 436
LVKTGTI+T+++ HNMK+MKFSVSPVVRVAVEPKNPADLPKLVEGL RLAKSDPMVQ
Sbjct: 453 LVKTGTISTYEHCHNMKMMKFSVSPVVRVAVEPKNPADLPKLVEGLNRLAKSDPMVQSFT 512
Query: 437 EESGEHIVAGAGELHLEICLKDLE--XTMLAFQSRSLTLSCRTVRP*LRNRNQLCLSKSP 610
EESGEHIVAGAGELHLEICLKDLE + + +S R NQ+CLSKSP
Sbjct: 513 EESGEHIVAGAGELHLEICLKDLEEDHACIPLKKSEPVVSYRECVS--DKSNQMCLSKSP 570
Query: 611 NKHNRLFMKAQPMPDGLPEDIXE 679
NKHNRLFM A P+ + LPEDI +
Sbjct: 571 NKHNRLFMTAGPLEEKLPEDIDD 593
Score = 141 bits (341), Expect = 5e-34
Identities = 65/78 (83%), Positives = 70/78 (89%)
Frame = +3
Query: 21 KMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRYVE 200
+MVPTSDKGRFYAFGRVFSGKV +GQK RIMGP++ PGKKEDLY KTIQRTILMMGRY+E
Sbjct: 374 EMVPTSDKGRFYAFGRVFSGKVASGQKVRIMGPHYVPGKKEDLYLKTIQRTILMMGRYIE 433
Query: 201 AIEDVPSGNICGLVGVDQ 254
I DVP GNI GLVGVDQ
Sbjct: 434 PIVDVPCGNIVGLVGVDQ 451
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 100 bits (240), Expect = 9e-22
Identities = 52/145 (35%), Positives = 87/145 (60%), Gaps = 6/145 (4%)
Frame = +2
Query: 257 LVKTGTITTFKN---AHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ 427
+VKT TIT + A+ + +KF+ +++AVEP NP++LPK+++GL+++ KS P++
Sbjct: 427 IVKTATITEVQGSEEAYIFRPLKFNTCSTIKIAVEPHNPSELPKMLDGLRKVNKSYPLLT 486
Query: 428 CINEESGEHIVAGAGELHLEICLKDLEXTMLAFQSR---SLTLSCRTVRP*LRNRNQLCL 598
EESGEH++ G GEL+L+ + DL + + C TV + + C
Sbjct: 487 TKVEESGEHVILGTGELYLDCIMHDLRRMYSEIDIKVADPVIAFCETV---VETSSLKCF 543
Query: 599 SKSPNKHNRLFMKAQPMPDGLPEDI 673
+++PNK N++ M A+P+ GL EDI
Sbjct: 544 AETPNKKNKVTMIAEPLEKGLAEDI 568
Score = 61.7 bits (143), Expect = 5e-10
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = +3
Query: 9 VYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 188
V+ +K P+ D F+ FGRV SG + GQ+ RI+G N+T +ED + R +
Sbjct: 344 VHTTKQYPSQDATAFHVFGRVMSGTLYAGQQVRILGENYTMEDEEDSRVGIVGRLWIAEA 403
Query: 189 RYVEAIEDVPSGNICGLVGVDQ 254
RY + VP+GN + GVDQ
Sbjct: 404 RYNIEVNRVPAGNWVLIEGVDQ 425
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 29.9 bits (64), Expect(2) = 0.058
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = -1
Query: 432 IHCTMGSDLARRLRPSTSLGRSAGFLGSTATRTTGD 325
I C MG D RLR ST L R F+GS T D
Sbjct: 1062 IECNMGFDAVMRLRTSTGL-RPVDFVGSFYMSNTTD 1096
Score = 23.8 bits (49), Expect(2) = 0.058
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 609 GDFERQSWFRFLSYGLTVRHDRVRLLDWN 523
GD R S+F+ +++G R D R ++ N
Sbjct: 1037 GDIYRYSYFKEVTHGEQFREDLKRAIECN 1065
>SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 34.7 bits (76), Expect = 0.070
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 368 DLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 490
DL + + + R + DP + ++ES E I++G GELHL++
Sbjct: 36 DLDQFSKAINRFTREDPTFRVRFDDESKETIISGMGELHLDV 77
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 39 DKGRFYAFGRVFSGKVVTGQKARIMGPNFTP 131
+K F AF RV+SG + GQ+ I+GP P
Sbjct: 498 NKTHFMAFARVYSGTISRGQQLYILGPKHDP 528
>SB_24564| Best HMM Match : Rad50_zn_hook (HMM E-Value=6.6)
Length = 263
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 67 AFSLARLLPDKKLASWDQTLHLERKRTCMRRLSSV 171
A S++RL P + A W QT+H R R+ R+ SV
Sbjct: 182 AQSVSRLPPIYRRAEWAQTVHRARSRSIPARVESV 216
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 449 EHIVAGAGELHLEICLKDLE 508
EH++ AGE+HL+ C+ DL+
Sbjct: 2 EHVIIAAGEVHLQRCVDDLK 21
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 514 HACIPIKKSDPVVSYRETV 570
+AC+ + SDP++ +RETV
Sbjct: 24 YACVELNVSDPIIPFRETV 42
>SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = -1
Query: 630 NRRLCLLGDFERQSWFRFLSYGLTVRHDRVR-LLDWNASMVXSRSLRQISRWSSPA 466
NRRL + + E+ + + T R +R+ ++D+ A + S SL +ISR +SPA
Sbjct: 67 NRRLWVFKELEKTGKCKLIK---TRRKERIENIIDYPAMLYGSASLAKISRNASPA 119
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 414 SDLARRLRPSTSLGRSAGFLGSTATRTTGDTLNFITFMLWAFLKV 280
S+ RR +P T GR+ FLG+ + R T NF+ F+ F+++
Sbjct: 1690 SNDGRRFKPYTQFGRTKVFLGN-SDRNTVVGHNFLPFIKARFIRI 1733
>SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2102
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Frame = +2
Query: 329 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIV----AGAGELHLEICL 496
P + EPK P P +++ L + K DP + S + ++ A G+L +
Sbjct: 1454 PKAKEEEEPKKPVRDPSIIDKLTLVKKVDPSDATLYVSSDDQVIYALDAKTGDLMWKYGT 1513
Query: 497 KDLEXTMLAFQSRSLTLSCRTVRP*LRNRNQL 592
+ +M AF L C T +R N+L
Sbjct: 1514 AEDGGSMCAFSPDETVLYCGTDDNFIRAFNRL 1545
>SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)
Length = 160
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 416 PMVQCINEESGEHIVAGAGELHLEICLKDL 505
P Q + E EH+VA +G+L E C K L
Sbjct: 26 PTWQRVKEFQNEHLVAQSGKLRFEACKKTL 55
>SB_8941| Best HMM Match : VWA (HMM E-Value=0)
Length = 2180
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -1
Query: 639 AFMNRRLCLLGDFERQSWFRFLSYGLTVRHDRVRLLDWNASMVXSRSLRQIS 484
AF + L G+ ++ R LT+RH RVR++ S + S+RQIS
Sbjct: 131 AFKTLFVILDGEIATETQKRLSDVSLTLRHARVRIV---LSCIGDESVRQIS 179
>SB_44879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 570 YGLTVRHDRVRLLDWNASMVXSRSLRQISRWSSPA 466
YG+ + R++ W+A + SRSLRQ R + A
Sbjct: 274 YGILPKQFRLQYRKWSAELFRSRSLRQSMRRENTA 308
>SB_28265| Best HMM Match : Ank (HMM E-Value=6.3e-20)
Length = 165
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 377 KLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLK 499
++V+ L A DP + +N S H A G+LH CLK
Sbjct: 119 EVVKWLVEKANCDPGAKTLNRMSAIHFAASGGDLH---CLK 156
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,567,457
Number of Sequences: 59808
Number of extensions: 481923
Number of successful extensions: 1321
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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