Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060440.seq
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 204 6e-53
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 204 6e-53
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 89 3e-18
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 89 3e-18
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.11
U41278-3|AAK31512.1| 453|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ... 30 1.8
Z95310-1|CAB08561.1| 444|Caenorhabditis elegans Hypothetical pr... 29 2.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 4.1
Z29094-6|CAD45581.1| 457|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z29094-5|CAA82336.1| 465|Caenorhabditis elegans Hypothetical pr... 28 5.4
U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms prot... 28 7.1
AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinosit... 28 7.1
AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein. 28 7.1
AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinosit... 28 7.1
Z82266-6|CAB05176.1| 393|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81493-4|CAB04041.1| 165|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 204 bits (497), Expect = 6e-53
Identities = 105/142 (73%), Positives = 115/142 (80%), Gaps = 3/142 (2%)
Frame = +2
Query: 257 LVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 436
LVK GTITT+K+AHNM+VMKFSVSPVVRVAVE KNPADLPKLVEGLKRLAKSDPMVQCI
Sbjct: 473 LVKGGTITTYKDAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIF 532
Query: 437 EESGEHIVAGAGELHLEICLKDLE--XTMLAFQSRSLTLSCR-TVRP*LRNRNQLCLSKS 607
EESGEHI+AGAGELHLEICLKDLE + + +S R TV+ NQ+CLSKS
Sbjct: 533 EESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETVQ---SESNQICLSKS 589
Query: 608 PNKHNRLFMKAQPMPDGLPEDI 673
PNKHNRL AQPMPDGL +DI
Sbjct: 590 PNKHNRLHCTAQPMPDGLADDI 611
Score = 156 bits (379), Expect = 1e-38
Identities = 70/82 (85%), Positives = 76/82 (92%)
Frame = +3
Query: 9 VYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 188
+Y+SKMVPTSDKGRFYAFGRVFSGKV TG KARI GPN+ PGKKEDLYEKTIQRTILMMG
Sbjct: 390 MYISKMVPTSDKGRFYAFGRVFSGKVATGMKARIQGPNYVPGKKEDLYEKTIQRTILMMG 449
Query: 189 RYVEAIEDVPSGNICGLVGVDQ 254
R++E IED+PSGNI GLVGVDQ
Sbjct: 450 RFIEPIEDIPSGNIAGLVGVDQ 471
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 204 bits (497), Expect = 6e-53
Identities = 105/142 (73%), Positives = 115/142 (80%), Gaps = 3/142 (2%)
Frame = +2
Query: 257 LVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 436
LVK GTITT+K+AHNM+VMKFSVSPVVRVAVE KNPADLPKLVEGLKRLAKSDPMVQCI
Sbjct: 473 LVKGGTITTYKDAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIF 532
Query: 437 EESGEHIVAGAGELHLEICLKDLE--XTMLAFQSRSLTLSCR-TVRP*LRNRNQLCLSKS 607
EESGEHI+AGAGELHLEICLKDLE + + +S R TV+ NQ+CLSKS
Sbjct: 533 EESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETVQ---SESNQICLSKS 589
Query: 608 PNKHNRLFMKAQPMPDGLPEDI 673
PNKHNRL AQPMPDGL +DI
Sbjct: 590 PNKHNRLHCTAQPMPDGLADDI 611
Score = 156 bits (379), Expect = 1e-38
Identities = 70/82 (85%), Positives = 76/82 (92%)
Frame = +3
Query: 9 VYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 188
+Y+SKMVPTSDKGRFYAFGRVFSGKV TG KARI GPN+ PGKKEDLYEKTIQRTILMMG
Sbjct: 390 MYISKMVPTSDKGRFYAFGRVFSGKVATGMKARIQGPNYVPGKKEDLYEKTIQRTILMMG 449
Query: 189 RYVEAIEDVPSGNICGLVGVDQ 254
R++E IED+PSGNI GLVGVDQ
Sbjct: 450 RFIEPIEDIPSGNIAGLVGVDQ 471
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 89.0 bits (211), Expect = 3e-18
Identities = 44/142 (30%), Positives = 79/142 (55%), Gaps = 3/142 (2%)
Frame = +2
Query: 257 LVKTGTITTF---KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ 427
+VKT TI ++ + + +KF+ V++AVEP NP++LPK+++GL+++ KS P++
Sbjct: 563 IVKTATIAELGYEEDVYIFRPLKFNTRSCVKLAVEPINPSELPKMLDGLRKVNKSYPLLT 622
Query: 428 CINEESGEHIVAGAGELHLEICLKDLEXTMLAFQSRSLTLSCRTVRP*LRNRNQLCLSKS 607
EESGEH++ G GE +++ + D+ + + C +++
Sbjct: 623 TRVEESGEHVLLGTGEFYMDCVMHDMRKVFSEIDIKVADPVVTFNETVIETSTLKCFAET 682
Query: 608 PNKHNRLFMKAQPMPDGLPEDI 673
PNK N++ M A+P+ L EDI
Sbjct: 683 PNKKNKITMMAEPLEKQLDEDI 704
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/82 (30%), Positives = 42/82 (51%)
Frame = +3
Query: 9 VYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 188
V+ +K P D +F+ FGRV SG + R++G N++ +ED T+ R + +
Sbjct: 480 VHTTKNYPVDDATQFHVFGRVMSGTLEANTDVRVLGENYSIQDEEDCRRMTVGRLFVRVA 539
Query: 189 RYVEAIEDVPSGNICGLVGVDQ 254
Y + VP+G + G+DQ
Sbjct: 540 SYQIEVSRVPAGCWVLIEGIDQ 561
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 89.0 bits (211), Expect = 3e-18
Identities = 44/142 (30%), Positives = 79/142 (55%), Gaps = 3/142 (2%)
Frame = +2
Query: 257 LVKTGTITTF---KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ 427
+VKT TI ++ + + +KF+ V++AVEP NP++LPK+++GL+++ KS P++
Sbjct: 438 IVKTATIAELGYEEDVYIFRPLKFNTRSCVKLAVEPINPSELPKMLDGLRKVNKSYPLLT 497
Query: 428 CINEESGEHIVAGAGELHLEICLKDLEXTMLAFQSRSLTLSCRTVRP*LRNRNQLCLSKS 607
EESGEH++ G GE +++ + D+ + + C +++
Sbjct: 498 TRVEESGEHVLLGTGEFYMDCVMHDMRKVFSEIDIKVADPVVTFNETVIETSTLKCFAET 557
Query: 608 PNKHNRLFMKAQPMPDGLPEDI 673
PNK N++ M A+P+ L EDI
Sbjct: 558 PNKKNKITMMAEPLEKQLDEDI 579
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/82 (30%), Positives = 42/82 (51%)
Frame = +3
Query: 9 VYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 188
V+ +K P D +F+ FGRV SG + R++G N++ +ED T+ R + +
Sbjct: 355 VHTTKNYPVDDATQFHVFGRVMSGTLEANTDVRVLGENYSIQDEEDCRRMTVGRLFVRVA 414
Query: 189 RYVEAIEDVPSGNICGLVGVDQ 254
Y + VP+G + G+DQ
Sbjct: 415 SYQIEVSRVPAGCWVLIEGIDQ 436
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +2
Query: 329 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 490
PV+ +A++P N D ++ L R K DP + N+E+ E IV+G GELHLEI
Sbjct: 446 PVISMAIKPVNRKDADNFIKALTRFTKEDPTFRREYNQEAKETIVSGMGELHLEI 500
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/84 (30%), Positives = 47/84 (55%)
Frame = +2
Query: 254 VLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCI 433
+L++ T+ + +K+ + +VRV++ + D+ L E LK LA D ++ +
Sbjct: 451 ILLQNTTLCEKPDFPCLKIGSQTGEALVRVSISTQQLDDMDDLREKLKLLALLDTSLKVM 510
Query: 434 NEESGEHIVAGAGELHLEICLKDL 505
E+GE + AGE+HL+ C+KDL
Sbjct: 511 ELENGELAMVTAGEVHLQKCIKDL 534
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/84 (30%), Positives = 47/84 (55%)
Frame = +2
Query: 254 VLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCI 433
+L++ T+ + +K+ + +VRV++ + D+ L E LK LA D ++ +
Sbjct: 451 ILLQNTTLCEKPDFPCLKIGSQTGEALVRVSISTQQLDDMDDLREKLKLLALLDTSLKVM 510
Query: 434 NEESGEHIVAGAGELHLEICLKDL 505
E+GE + AGE+HL+ C+KDL
Sbjct: 511 ELENGELAMVTAGEVHLQKCIKDL 534
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 347 VEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKD 502
+EP + L + + L+ L + DP ++ + ++G+ IV GELHLE +KD
Sbjct: 399 IEPPSNRQLNQFNKALEELTREDPSMKIRFDRDTGQTIVETQGELHLE-AIKD 450
>U41278-3|AAK31512.1| 453|Caenorhabditis elegans Hypothetical
protein F33G12.4 protein.
Length = 453
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 293 AHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSD 415
A + F +P V V + NP L +L+E ++++ K +
Sbjct: 71 AQGKTTITFQTTPAVMVCISKANPEALAQLIEAIRKIVKGE 111
>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
protein R155.3 protein.
Length = 1165
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 233 WSCWSRSVLVKTGTITTFKNAHNMKVMKFSVSPVVR---VAVEPK-NPADL-PKLVEGLK 397
W W + KTG T+K +K F V+P + +A EPK PA+ PK +
Sbjct: 1085 WFSWPQKQQAKTGEKRTYKKIKQLKDYGFEVAPEPKPTPIAPEPKPTPAETKPKDRLEQR 1144
Query: 398 RLAKSD 415
+AK D
Sbjct: 1145 GMAKVD 1150
>Z95310-1|CAB08561.1| 444|Caenorhabditis elegans Hypothetical
protein H40L08.1 protein.
Length = 444
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 426 CTMGSDLARRLRPSTSLGRS 367
C MGS+ A+RLRP + GRS
Sbjct: 202 CVMGSEDAQRLRPDRAFGRS 221
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -1
Query: 390 PSTSLGRSAGFLGSTATRTTGDTLN 316
PSTS G AGFL STA + G N
Sbjct: 142 PSTSSGLPAGFLNSTANSSVGANNN 166
>Z29094-6|CAD45581.1| 457|Caenorhabditis elegans Hypothetical
protein C07A9.7b protein.
Length = 457
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 186 GRYVEAIEDVPSGN-ICGLVGV 248
GR+VEAIED+P G +C G+
Sbjct: 29 GRFVEAIEDIPIGTVVCVETGI 50
>Z29094-5|CAA82336.1| 465|Caenorhabditis elegans Hypothetical
protein C07A9.7a protein.
Length = 465
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 186 GRYVEAIEDVPSGN-ICGLVGV 248
GR+VEAIED+P G +C G+
Sbjct: 29 GRFVEAIEDIPIGTVVCVETGI 50
>U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms protein
1 protein.
Length = 442
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -3
Query: 475 FSSTSDNVFS*FFINTLHHGVRFSQTFKTFY*LGQIS 365
F+ST+ NVF F +++L HG+ F T T LG I+
Sbjct: 303 FNSTACNVFFTFAVSSLLHGLDFQMTI-TLLALGFIA 338
>AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinositide
3-kinase adaptersubunit protein.
Length = 522
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 480 WSSPAPATMCSPDSSLIHCT 421
W SP+P T S DS L+H T
Sbjct: 495 WDSPSPDTPSSSDSRLVHPT 514
>AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein.
Length = 442
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -3
Query: 475 FSSTSDNVFS*FFINTLHHGVRFSQTFKTFY*LGQIS 365
F+ST+ NVF F +++L HG+ F T T LG I+
Sbjct: 303 FNSTACNVFFTFAVSSLLHGLDFQMTI-TLLALGFIA 338
>AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinositide
kinase adaptersubunit protein 1 protein.
Length = 522
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 480 WSSPAPATMCSPDSSLIHCT 421
W SP+P T S DS L+H T
Sbjct: 495 WDSPSPDTPSSSDSRLVHPT 514
>Z82266-6|CAB05176.1| 393|Caenorhabditis elegans Hypothetical
protein F23B2.10 protein.
Length = 393
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -2
Query: 206 NSFNITPHHKDCTLDSLLIQVLFLSRC 126
NSF++TPH D L+++++++ + C
Sbjct: 123 NSFDLTPHTTDELLETIILRIKSIGIC 149
>Z81493-4|CAB04041.1| 165|Caenorhabditis elegans Hypothetical
protein F01D5.5 protein.
Length = 165
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -3
Query: 124 KFGPMMRAFCPVT--TLPEKTRPK 59
K+ PM++AFCPVT P T P+
Sbjct: 72 KYTPMLKAFCPVTCNMCPGATTPE 95
>Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical
protein T21C9.2 protein.
Length = 1058
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 455 IVAGAGELHLEICLKDLEXTMLAFQSRSLTLSCRTV 562
++ GAG L L + LK + LA RSL L CR +
Sbjct: 869 LILGAGALQL-VGLKTISVRNLALAGRSLELVCRFI 903
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,310,418
Number of Sequences: 27780
Number of extensions: 341172
Number of successful extensions: 980
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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