Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060439.seq
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    80   3e-16
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    29   0.49 
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    27   2.6  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   6.0  
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    25   7.9  

>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 35/90 (38%), Positives = 56/90 (62%)
 Frame = +3

Query: 261 GAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDXIVPIDKLVKGR 440
           G A  Q  D ++   +P+K++ F+ N E++YI N+K+LQ  F K G+D +V  ++L + +
Sbjct: 29  GYAMIQIFDSIYQ-DIPLKKVNFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCK 87

Query: 441 FQDNFEFLXWFKKFFDANYGGAAMDAVGAR 530
            QDN EF+ W K+F+D  Y G   DA+  R
Sbjct: 88  MQDNLEFVQWAKRFWDQYYPGGDYDALARR 117


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 309 PMKRIKFKTNLEHEYIQNFKILQAGFK 389
           P KR+K KT L+HE+     + ++GF+
Sbjct: 388 PSKRVKAKTALQHEFFNACGVTRSGFE 414


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 11  KNEVSVLDKNSNKFDNLSHTAKLFR 85
           +NE + + K SN  DNL+ +++LFR
Sbjct: 265 QNEHTEVQKKSNSIDNLTPSSELFR 289


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 324 KFKTNLEHEYIQNFKILQAGFK 389
           K  TNLE+EY   +KI+Q  FK
Sbjct: 748 KSSTNLENEYQTPWKIIQNPFK 769


>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 155 TFTAIFTMYQPLIKKFLTV 99
           TF A FT Y PL+ +FL V
Sbjct: 45  TFMAPFTPYMPLLGRFLIV 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,252
Number of Sequences: 5004
Number of extensions: 49227
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)