Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060439.seq
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1332 + 32718584-32718706,32718892-32718960,32719069-327191...    89   2e-18
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192...    85   5e-17
03_02_0553 - 9420960-9421164,9421634-9421812,9421902-9421970,942...    30   2.0  

>04_04_1332 +
           32718584-32718706,32718892-32718960,32719069-32719155,
           32719865-32719971,32720066-32720187,32720462-32720535,
           32720833-32720946,32721100-32721213
          Length = 269

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 40/92 (43%), Positives = 57/92 (61%)
 Frame = +3

Query: 228 VKLCEDRRXCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDX 407
           + L +     +GA  CQ MDM+ PG VPM ++ F    E++ IQN+KILQ  F K+ +  
Sbjct: 34  LSLAKVEEAASGAVQCQLMDMVHPGVVPMHKVNFDAKTEYDMIQNYKILQDVFNKLRLSK 93

Query: 408 IVPIDKLVKGRFQDNFEFLXWFKKFFDANYGG 503
            + ++KLVKGR  DN EFL W K++ D+  GG
Sbjct: 94  NIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGG 125


>10_08_0523 -
           18518158-18518442,18518786-18518899,18518994-18519219,
           18519364-18519470,18519809-18519964,18520100-18520210
          Length = 332

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 36/82 (43%), Positives = 52/82 (63%)
 Frame = +3

Query: 258 TGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDXIVPIDKLVKG 437
           +GA  CQ MD   PG+VPM ++ F    E+E IQN+K+LQ  F K+ +   + ++KL KG
Sbjct: 40  SGAVACQLMDAAHPGAVPMHKVNFDAKTEYEMIQNYKVLQDVFNKLKITKHIEVNKLTKG 99

Query: 438 RFQDNFEFLXWFKKFFDANYGG 503
           R  DN EF+ W K++ D+  GG
Sbjct: 100 RPLDNLEFMQWMKRYCDSVNGG 121


>03_02_0553 -
           9420960-9421164,9421634-9421812,9421902-9421970,
           9422452-9422607,9422756-9422968
          Length = 273

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -1

Query: 586 LSXSAPRGGRAPVPQGRP 533
           ++ SAPRGG A +PQGRP
Sbjct: 203 VAKSAPRGGPAGLPQGRP 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,255,774
Number of Sequences: 37544
Number of extensions: 313752
Number of successful extensions: 894
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)