Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060439.seq
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)             125   4e-29
SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)                      32   0.52 
SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)                29   3.6  
SB_41882| Best HMM Match : Amelogenin (HMM E-Value=2)                  28   6.4  

>SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score =  125 bits (301), Expect = 4e-29
 Identities = 55/77 (71%), Positives = 62/77 (80%)
 Frame = +3

Query: 306 VPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDXIVPIDKLVKGRFQDNFEFLXWFKKFF 485
           VP+K++KF    EHEYI NFKILQ+ FKK G D I+P+DKLVKGRFQDNFEFL WFKKFF
Sbjct: 43  VPLKKVKFGAKQEHEYIANFKILQSAFKKCGCDKIIPVDKLVKGRFQDNFEFLQWFKKFF 102

Query: 486 DANYGGAAMDAVGARXG 536
           DANYGG   +AV AR G
Sbjct: 103 DANYGGQEYNAVEARHG 119


>SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)
          Length = 1119

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 441  FQDNFEFLXWFKKFFD-ANYGGAAMDAVGARXG-LPWGTGARPPRGALXLRNPSALS 605
            F+D F F    K   + +N GG   + +G +     WG G RPPR    L  PS+LS
Sbjct: 1054 FEDQFLFNEQMKAEHEVSNTGGGGCEELGLQGPHADWGRGTRPPR---RLSKPSSLS 1107


>SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 583 SXSAPRGGRAPVPQGRPXRAPTASIAAP 500
           S + PR G  PV   RP + PT+  A P
Sbjct: 196 SSTVPRSGSPPVSSSRPAQKPTSQTALP 223


>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
          Length = 820

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = +3

Query: 261 GAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKI-LQAGFKKMGVDXIVPIDKLVKG 437
           G A C+ ++ L PG +P  + K KTN E       KI +Q      G+  I+    L   
Sbjct: 456 GMAICELVNALQPGLIPDSKYKEKTNSE----ATAKIGIQTAHDAFGIPLIISPFDLTAS 511

Query: 438 RFQDNFEFLXWFKKF 482
              D    L +   F
Sbjct: 512 EHADELGMLTYIALF 526


>SB_41882| Best HMM Match : Amelogenin (HMM E-Value=2)
          Length = 264

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 586 LSXSAPRGGRAPVPQGRPXRAP 521
           L  S P+G   PVPQGRP   P
Sbjct: 163 LGPSLPQGRLGPVPQGRPPIGP 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,401,752
Number of Sequences: 59808
Number of extensions: 356580
Number of successful extensions: 655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)