Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060439.seq
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...   126   2e-29
AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical ...    90   2e-18
U10402-3|AAK95874.1|  734|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81147-8|CAB03537.1|  338|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score =  126 bits (303), Expect = 2e-29
 Identities = 55/115 (47%), Positives = 78/115 (67%)
 Frame = +3

Query: 258 TGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDXIVPIDKLVKG 437
           TGA YC F D LFP S+ +K++K+ + LE +++ N+K++Q  +K +GV+ ++P+DKL+KG
Sbjct: 43  TGAGYCLFTDFLFPDSIQLKKVKWNSRLELDWLSNWKLVQTTWKNLGVEKVIPVDKLIKG 102

Query: 438 RFQDNFEFLXWFKKFFDANYGGAAMDAVGARXGLPWGTGARPPRGALXLRNPSAL 602
           +FQDNFEFL WFKK FDANY G   D + AR G    T   P  GA   + PS +
Sbjct: 103 KFQDNFEFLQWFKKLFDANYDGHEYDPMQARNGEGLPTEGGPAAGA-SAKTPSRM 156



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 23/34 (67%), Positives = 30/34 (88%)
 Frame = +1

Query: 148 VNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIE 249
           VNVY+T  +++NLSRH+ML WVNDCLQ++F KIE
Sbjct: 6   VNVYTTASSADNLSRHEMLMWVNDCLQAHFTKIE 39


>AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical
           protein VW02B12L.3 protein.
          Length = 299

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 7/109 (6%)
 Frame = +3

Query: 258 TGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDXIVPIDKLVKG 437
           +GAAYCQ   +LF  ++ +K++KF    E + + N+K+L   +K +G+D  V ++K+ K 
Sbjct: 40  SGAAYCQLTHLLF-NAINLKKVKFNPRSEPDVLNNWKVLTTTWKDLGIDKPVDVEKMKKA 98

Query: 438 RFQDNFEFLXWFKKFFDANY--GGAAMDAVGARXG-----LPWGTGARP 563
           +FQDN EFL WF KF++AN        DAVGAR G     L   TG+RP
Sbjct: 99  KFQDNMEFLQWFYKFYNANLTTEPEEYDAVGARFGEDLPALKGSTGSRP 147



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/36 (50%), Positives = 28/36 (77%)
 Frame = +1

Query: 142 MAVNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIE 249
           M VNV+ + VT++ LSR + +AWVN+ L+S+F K+E
Sbjct: 1   MVVNVFISAVTTDTLSRKEAVAWVNNLLKSHFTKVE 36


>U10402-3|AAK95874.1|  734|Caenorhabditis elegans Hypothetical
           protein C34E10.5 protein.
          Length = 734

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +1

Query: 382 VLKRWVWTR*XPLTNW*RVVSKIILSFCXGSRNSLTPTMEVRLWTQWA 525
           +LK+W+WTR    T W ++ S I    C    ++ T    V LWT WA
Sbjct: 178 ILKKWIWTRNSRFTVWVQLPSAI--EKCK-DYDAFT-IEHVDLWTIWA 221


>Z81147-8|CAB03537.1|  338|Caenorhabditis elegans Hypothetical
           protein T09E11.10 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +3

Query: 282 MDMLFPGSVPMKR-IKFKTNL---EHEYIQNFKILQAGFKK 392
           M M+F G  P K  I F +++   +HEY++ ++I  A FK+
Sbjct: 288 MTMMFMGYEPTKEPILFSSHIPLKDHEYLEQYRIQMADFKE 328


>Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical
           protein W02B12.3a protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 583 SXSAPRGGRAPVPQGRPXRAPTAS 512
           S S PRG R+P  +G P R+ +AS
Sbjct: 280 SPSPPRGSRSPSEKGSPRRSRSAS 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,979,872
Number of Sequences: 27780
Number of extensions: 277560
Number of successful extensions: 655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)