Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060439.seq
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67270.1 68418.m08480 microtubule-associated EB1 family prote...    93   1e-19
At5g62500.1 68418.m07844 microtubule-associated EB1 family prote...    89   3e-18
At3g47690.1 68416.m05194 microtubule-associated EB1 family prote...    88   5e-18
At5g11050.1 68418.m01291 myb family transcription factor contain...    28   6.9  
At1g70130.1 68414.m08070 lectin protein kinase, putative similar...    28   6.9  

>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
           similar to SP|Q9UPY8 Microtubule-associated protein
           RP/EB family member 3 (Protein EB3) {Homo sapiens};
           contains Pfam profiles PF00307: Calponin homology (CH)
           domain, PF03271: EB1 protein
          Length = 329

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 40/92 (43%), Positives = 58/92 (63%)
 Frame = +3

Query: 228 VKLCEDRRXCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDX 407
           + L +    C+GA +CQ MD + PG+VPM ++ F    E+E IQN+K+LQ  F K+ +  
Sbjct: 29  LNLSKVEEACSGAVHCQLMDSVHPGTVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITK 88

Query: 408 IVPIDKLVKGRFQDNFEFLXWFKKFFDANYGG 503
            + + KLVKGR  DN EF+ W KK+ D+  GG
Sbjct: 89  HIEVSKLVKGRPLDNLEFMQWMKKYCDSVNGG 120



 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 184 LSRHDMLAWVNDCLQSNFAKIE 249
           + R ++LAW+N  LQ N +K+E
Sbjct: 14  VGRSEILAWINSTLQLNLSKVE 35


>At5g62500.1 68418.m07844 microtubule-associated EB1 family protein
           similar to EBF3-S (Microtubule-associated protein) [Homo
           sapiens] GI:12751131; contains Pfam profiles PF00307:
           Calponin homology (CH) domain, PF03271: EB1 protein
          Length = 293

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 38/82 (46%), Positives = 55/82 (67%)
 Frame = +3

Query: 258 TGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDXIVPIDKLVKG 437
           +GA  CQ +DM FPG VPM ++ F+   E+E IQN+K++Q  F K+ +   + +++LVKG
Sbjct: 39  SGAVQCQMLDMTFPGVVPMHKVNFEAKNEYEMIQNYKVMQEVFTKLKITKPLEVNRLVKG 98

Query: 438 RFQDNFEFLXWFKKFFDANYGG 503
           R  DN EFL W K+F D+  GG
Sbjct: 99  RPLDNLEFLQWLKRFCDSINGG 120



 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 184 LSRHDMLAWVNDCLQSNFAKIE 249
           + R+++L+W+ND L  N ++IE
Sbjct: 14  VGRNEILSWINDRLHLNLSRIE 35


>At3g47690.1 68416.m05194 microtubule-associated EB1 family protein
           similar to SP|Q9UPY8 Microtubule-associated protein
           RP/EB family member 3 (Protein EB3) {Homo sapiens};
           contains Pfam profile PF03271: EB1 protein
          Length = 276

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 39/82 (47%), Positives = 54/82 (65%)
 Frame = +3

Query: 258 TGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDXIVPIDKLVKG 437
           +GA  CQ +DM FPG VPM ++ F    E++ IQN+K+LQ  F K+ +   + I++LVKG
Sbjct: 39  SGAVQCQMLDMTFPGVVPMHKVNFDAKNEYDMIQNYKVLQDVFNKLKITKPLEINRLVKG 98

Query: 438 RFQDNFEFLXWFKKFFDANYGG 503
           R  DN EFL W K+F D+  GG
Sbjct: 99  RPLDNLEFLQWLKRFCDSINGG 120


>At5g11050.1 68418.m01291 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA binding domain;
           identical to cDNA putative transcription factor MYB64
           (MYB64) GI:15375309
          Length = 423

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 508 AAPP*LASKNFLNHXKNSKLSWKRPFTSLSMGTIXST 398
           AAPP  A + FLN  KN  L +K+   S+    + +T
Sbjct: 15  AAPPLTAVERFLNGQKNEALCFKKQERSIDRPIVKTT 51


>At1g70130.1 68414.m08070 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733
          Length = 656

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 337 FVLNLILFXGTLPGNSMSMNWQ*AAPVQXLRSSQSLTGDNHSPTLAYHAA 188
           FV  ++    T+ G  +S N    +P + L S  ++   NHS ++ +H A
Sbjct: 88  FVFAIVAVRKTIAGCGLSFN---ISPTKGLNSVPNIDHSNHSVSVGFHTA 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,151,085
Number of Sequences: 28952
Number of extensions: 252079
Number of successful extensions: 563
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)