Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060438.seq
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    25   0.43 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    25   0.43 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   3.0  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   3.0  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      22   4.0  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   7.0  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   7.0  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   7.0  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   7.0  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   7.0  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   7.0  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   7.0  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   7.0  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 237 KWPSPGDGGGQADPARRGV 293
           +W SP D    +D ARRGV
Sbjct: 124 EWSSPPDARAASDAARRGV 142


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 237 KWPSPGDGGGQADPARRGV 293
           +W SP D    +D ARRGV
Sbjct: 280 EWSSPPDARAASDAARRGV 298


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = -1

Query: 238 FIHVGVVHDSG----PGVSVARQHIHDPG 164
           F+H G+VH+ G    P  +V+   +  PG
Sbjct: 72  FVHSGMVHNDGTQLMPSPTVSGSEMSSPG 100


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = -1

Query: 238 FIHVGVVHDSG----PGVSVARQHIHDPG 164
           F+H G+VH+ G    P  +V+   +  PG
Sbjct: 72  FVHSGMVHNDGTQLMPSPTVSGSEMSSPG 100


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
 Frame = -1

Query: 307 CALSSTPRRAGSA--CPPPSPGEGHFIHV 227
           C   S  R A  +  CP   PGE  FI V
Sbjct: 89  CCQESGEREASVSLFCPKAKPGERKFIKV 117


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 189 PGNIFTTPGGKPASLTS 139
           P ++ T+P GKPA+ T+
Sbjct: 146 PLSVSTSPPGKPATSTT 162


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 189 PGNIFTTPGGKPASLTS 139
           P ++ T+P GKPA+ T+
Sbjct: 146 PLSVSTSPPGKPATSTA 162


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 189 PGNIFTTPGGKPASLTS 139
           P ++ T+P GKPA+ T+
Sbjct: 146 PLSVSTSPPGKPATSTA 162


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 189 PGNIFTTPGGKPASLTS 139
           P ++ T+P GKPA+ T+
Sbjct: 146 PLSVSTSPPGKPATSTA 162


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 189 PGNIFTTPGGKPASLTS 139
           P ++ T+P GKPA+ T+
Sbjct: 146 PLSVSTSPPGKPATSTA 162


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 189 PGNIFTTPGGKPASLTS 139
           P ++ T+P GKPA+ T+
Sbjct: 102 PLSVSTSPPGKPATSTA 118


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 189 PGNIFTTPGGKPASLTS 139
           P ++ T+P GKPA+ T+
Sbjct: 146 PLSVSTSPPGKPATSTA 162


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 189 PGNIFTTPGGKPASLTS 139
           P ++ T+P GKPA+ T+
Sbjct: 146 PLSVSTSPPGKPATSTA 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,573
Number of Sequences: 336
Number of extensions: 2364
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)