Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060438.seq
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                28   0.071
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.38 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 0.071
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 204 GPLSWTTPTWIKWPSPGDGGGQADPARRGVDDKAHHVGAG 323
           G  S+TT T     +PG G   A PA  GV D      +G
Sbjct: 221 GRPSYTTATMATTSTPGSGSLPASPADSGVSDVESSTSSG 260


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 317 SNVMRFIVDAAPRWISLPTSVT 252
           S+  R +V   PRWI  PT V+
Sbjct: 695 SHTQRLVVHVPPRWIVEPTDVS 716


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 252 PVKA-TLSTSGWSTIAAPVSP 193
           P +A +LSTSG S I  PVSP
Sbjct: 304 PAEAESLSTSGSSGILTPVSP 324


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -1

Query: 172 DPGRETCFLD*LSDVQRCERRLLGRLHDHSTTRRQSWPELPSRHQ 38
           DPG  T  +  L    +   R     H  S+   QSW  L S H+
Sbjct: 52  DPGAITGLVASLDGALKLRIRCSDVHHFESSFNAQSWQRLTSLHE 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,019
Number of Sequences: 438
Number of extensions: 2974
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)