Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060437.seq
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.1  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   3.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   4.0  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   7.1  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   7.1  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.3  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 429 AVQNAAITEGEEKKDDKAIEPPMDPNVRVSQ 521
           AVQ +++TEG+  K  K   P  D N   SQ
Sbjct: 65  AVQGSSLTEGKRSKRSK--RPNGDTNGDTSQ 93


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 324  EACKVFHICIRVHVLHCKTWPQCH 253
            E+C  F++C+  H++     P  H
Sbjct: 1216 ESCSSFYVCVNGHLVPQNCAPGLH 1239


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 262 RPSFTVKYMHSNAN 303
           +P FT KY H N N
Sbjct: 57  QPGFTGKYCHENIN 70


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 168 SPSCRSDGIPTPECSSANPRLENSS 242
           SPS     +PT   S++NP   + S
Sbjct: 76  SPSSTPSSLPTQRTSTSNPTYSSRS 100


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 238 LQKEFVTLRPSFT 276
           + K FV  RPSFT
Sbjct: 285 VMKSFVNFRPSFT 297


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 506 CKGIPDFWYNIFRNVSMLSE 565
           C+G   F+   + N+S +SE
Sbjct: 22  CEGCKSFFGRTYNNISSISE 41


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 196 LPPNVRRRIRALRTLQKEFVTLRPSFTVKYMH 291
           +P   +R++  L    +   +LRP  T KY H
Sbjct: 265 IPEAEKRKLIHLLQEYRCIFSLRPGLTHKYTH 296


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,866
Number of Sequences: 336
Number of extensions: 3109
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)