Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060437.seq
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    46   4e-06
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    41   1e-04
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    32   0.067
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   1.9  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   4.4  
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   5.8  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   7.7  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 21/51 (41%), Positives = 27/51 (52%)
 Frame = +2

Query: 485 RASNGSQCKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDP 637
           +   G   KGIP+FW    +NV  LSEM+   DE  L  L DI++   E P
Sbjct: 154 KQEGGDDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP 204



 Score = 31.9 bits (69), Expect = 0.088
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 172 LHAEAMASLPPNVRRRIRALRTLQKEFVTLRPSFTVKYMH-SNANMKNFTSLFMK 333
           L +E ++ LP  V+RRI  LR LQK +  L   F  +      A  K +  +F +
Sbjct: 63  LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKR 117


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +2

Query: 509 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK 616
           KGIP+FW     NV ++ EM+   DE +L+ L DI+
Sbjct: 164 KGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIR 199


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 32.3 bits (70), Expect = 0.067
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
 Frame = -2

Query: 608 LASILELVHHVLASFR*ALRHS*ICCTKSLGYPYIGIH-WRLDSLVILLFLTLSDGSI-- 438
           LAS++  V   +A F  +L +S    T  L   Y G+  + + ++ ILLF ++  G++  
Sbjct: 628 LASVMYYVAEQVAFF--SLGNSNSLATVDLSQAYTGLDSYNIFAVGILLFTSVFAGALWW 685

Query: 437 -LYRPS*LFFFSVITPWVETFIIIRFIC 357
            L++P  +   SV T W+ + I + F+C
Sbjct: 686 CLHQPKRMMDRSVKTFWIMSSISLTFLC 713


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 163 TNRLHAEAMASLPPNVRRRIRALRTLQKEFVTLRPS 270
           ++++ + A+A LPP+++  I+    LQK  +T  PS
Sbjct: 693 SSQISSSALAQLPPSMQSDIQQQLRLQKRSITEYPS 728


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -1

Query: 342 ELAFHKEACKVFHICIRVHVLHCKTWPQCHKLLLKSSQGAD 220
           EL F K+  ++F  CI V++ +C T    H+ L +S +GA+
Sbjct: 439 ELDFEKQ--RLFSACIEVYLSYCNTLIFLHR-LNESVEGAN 476


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 187 MASLPPNVRRRIRALRTLQKEFVTLRPSFTVKYMHSNANMKNFTSLFM 330
           MA LPP    RI   +  +   ++L   F  KY+  N N+ N   +F+
Sbjct: 190 MAILPPMAALRILFYQYSKASTMSLTDDFYNKYVLENLNIINNLQIFL 237


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 115  HLLKSGVTRNEMIAAITNRLHAEAMASLP 201
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 124 KSGVTRNEMIAAITNRLHAEAMASLPPNVRRRIRALRTLQKEFVTLRPSFTVKYMHSNAN 303
           K  +T NE    + N +  +   S   N +R++   R  QK+F+   P+F  +    +  
Sbjct: 620 KDALTINEFFT-LKNAVEKQDNVSFHVNKKRKVSQKREKQKKFLYDEPTFKKEASPHSDV 678

Query: 304 MKN 312
           +KN
Sbjct: 679 LKN 681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,476
Number of Sequences: 5004
Number of extensions: 52276
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)