Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060437.seq
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255...    53   2e-07
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031...    50   1e-06
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071...    49   3e-06
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746...    46   2e-05
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186...    40   0.001
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720...    37   0.013
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    29   3.4  
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408...    29   4.5  
12_01_0109 + 853043-853426,853653-853787,853866-854138                 28   6.0  
02_01_0051 - 385738-385968,386439-386864                               28   7.9  

>06_01_0356 +
           2557127-2557193,2557272-2557315,2557433-2557528,
           2559259-2559351,2559450-2559540,2559617-2559678,
           2559754-2559938,2560022-2560199,2560293-2560336,
           2560440-2560635,2560728-2560745,2560955-2561005
          Length = 374

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/51 (47%), Positives = 31/51 (60%)
 Frame = +2

Query: 500 SQCKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTL 652
           +  KG+PDFW    +   +LSE +QE DEP LK L+DIK    +DP  F L
Sbjct: 129 ADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDPKGFKL 179



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 175 HAEAMASLPPNVRRRIRALRTLQ 243
           H + + +L PNVR+R+  LR +Q
Sbjct: 47  HTDVLEALSPNVRKRVEYLREIQ 69


>05_06_0234 -
           26602660-26602728,26602814-26602988,26603077-26603120,
           26603204-26603381,26603468-26603652,26603737-26603801,
           26603985-26604066,26604342-26604434,26605096-26605191,
           26605312-26605355,26605467-26605530
          Length = 364

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 23/48 (47%), Positives = 30/48 (62%)
 Frame = +2

Query: 509 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTL 652
           KG+P+FW N  +N  +LSE +QE DE  LK L+DIK     +P  F L
Sbjct: 129 KGVPEFWLNAMKNHEILSEEIQERDEEALKYLKDIKWYRISEPKGFKL 176


>06_03_0740 -
           24006485-24006629,24006821-24006864,24006954-24007122,
           24007226-24007413,24007572-24007634,24007992-24008084,
           24009837-24009932,24010024-24010067,24010184-24010357,
           24010764-24010974
          Length = 408

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 23/49 (46%), Positives = 31/49 (63%)
 Frame = +2

Query: 500 SQCKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 646
           S+ KG+PDFW N  +N  +L+E + E DE  LK L+DIK    +DP  F
Sbjct: 205 SKEKGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGF 253


>01_06_0465 -
           29573972-29574110,29574300-29574343,29574434-29574602,
           29574707-29574894,29575081-29575145,29575257-29575311,
           29575502-29575594,29576035-29576130,29576259-29576302,
           29576419-29576431
          Length = 301

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/46 (45%), Positives = 28/46 (60%)
 Frame = +2

Query: 509 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 646
           KG+PDFW    +N  +L+E + E DE  LK L+DIK    +DP  F
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGF 148


>04_04_0122 -
           22918146-22918220,22918455-22918496,22918586-22918642,
           22918784-22918844,22919219-22919280,22919372-22919485,
           22919565-22919636,22919824-22919874,22919990-22920112,
           22921261-22921383
          Length = 259

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +2

Query: 509 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHED 634
           K IPDFW   F +  ML E++ E D+ I K L+ I V   ED
Sbjct: 73  KQIPDFWLTAFLSHPMLGELLTEDDQKIFKHLESIDVDDSED 114


>02_04_0344 -
           22171401-22171448,22171725-22171760,22171996-22172056,
           22173246-22173304,22173384-22173497,22173575-22173646,
           22173786-22173836,22173935-22174057,22175154-22175291
          Length = 233

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 515 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHED 634
           IPDFW   F +  +LSE++ E D+ + K L+ + V   +D
Sbjct: 80  IPDFWLTAFLSHPLLSELLTEEDQKMFKYLESVDVDDSKD 119


>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +3

Query: 399 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVRVSQTFGTTYSGMS 551
           DD EEEE  + V    I EG + ++ +A  P  D        F   Y G S
Sbjct: 169 DDVEEEEEEQVVSRLDIFEGAKGREARAFLPDEDDEDDDVVVFDPEYDGYS 219


>07_03_1756 -
           29239137-29239325,29239741-29240259,29240693-29240800,
           29240856-29241155,29241730-29241831,29243042-29243209,
           29243878-29243991,29244184-29244288,29244372-29244502,
           29244794-29244918,29245001-29245172,29245277-29245316,
           29245636-29245722,29245803-29245868,29246412-29246510,
           29246714-29246836,29247066-29247107,29247195-29247260,
           29247362-29247553,29247672-29247737,29248839-29249141
          Length = 1038

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 339 ALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGE 461
           A IV  + EPN  +  N  +D+T E+    A +NAA+T  +
Sbjct: 685 AAIVTASEEPNGGDSANKLKDETMEDP---ATENAAMTNAD 722


>12_01_0109 + 853043-853426,853653-853787,853866-854138
          Length = 263

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 196 GMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTP 65
           G+P L   GD+ + L+F  G+ H  T VAL   F       Q+P
Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171


>02_01_0051 - 385738-385968,386439-386864
          Length = 218

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = +3

Query: 441 AAITEGEEKKDDKAIEPPMDPNVRVSQTFGTTYSGMSQCSAK*CKNMMNQF*NACKILKC 620
           AA  E  EK   +  +PP  P   V    GT  +G ++C+    + +     +  +++ C
Sbjct: 87  AAAAEDPEKPPVQEADPPPPPPALVYSAAGTKLAGAAECAICLAEFVDG---DTVRVMPC 143

Query: 621 KCMKTP 638
            C + P
Sbjct: 144 WCQEIP 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,733,626
Number of Sequences: 37544
Number of extensions: 346131
Number of successful extensions: 963
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)