Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060437.seq
(681 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_30442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 3.5
SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1) 29 4.6
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23) 28 6.1
SB_49774| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27) 28 8.0
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3) 28 8.0
>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 59.3 bits (137), Expect = 3e-09
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +2
Query: 509 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKV 619
KGIP+FW +NV +LSEM+QEHDEPILK L D++V
Sbjct: 238 KGIPEFWLTAMKNVELLSEMIQEHDEPILKHLHDVRV 274
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/68 (35%), Positives = 30/68 (44%)
Frame = +3
Query: 252 CDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELARA 431
C +E KFY EVHA R I +G EP D+EC W D E+E+ A
Sbjct: 143 CKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEEC--RWPSDAEDEDEAEE 200
Query: 432 VQNAAITE 455
+ TE
Sbjct: 201 KEEKEATE 208
>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1718
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = +3
Query: 339 ALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVRVS 518
A+I + P D + +D + + A A I+ ++KD +D NV +S
Sbjct: 247 AIISDSMRHPEDMSTMRETQDQKQTDPAANGSSEATISNDSDRKDANIRFSDIDKNVNIS 306
Query: 519 QTFGTTYSGMSQCSAK 566
+ G SQ S K
Sbjct: 307 DSQGENIHVDSQSSKK 322
>SB_30442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 154 AAITNRLHAEAMASLPPNVRRRIRALRTLQKEFVTLRPSFTVKYMHSNANMKNF 315
AA T + H E PPN+R R L T K +LR S V + + +NF
Sbjct: 28 AASTLKPHYEKSLP-PPNIRPRSSRLSTSTKRIQSLRSSLLVNSSFAKNSYRNF 80
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 306 HICIRVHVLHCKTWPQCHKLLLK 238
HI +RV V C+ P C+K LLK
Sbjct: 3390 HIALRVEVYGCRLGPLCNKPLLK 3412
>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1900
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 405 TEEEELARAVQNA--AITEGEEKKDDKAIEPPMDPNVRVSQTFGTTYSGMSQCSAK 566
TE E++ ++N + E EEK+D + PN+R+ + FG S S+ K
Sbjct: 1840 TEIEDIHTIIKNIHQMMKEREEKEDKETKSSDKKPNIRIGKPFGRPSSFGSKTDDK 1895
>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
Length = 667
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 199 VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 101
V +PS +HE D PL F +GS + T + L H
Sbjct: 207 VPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239
>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
Length = 365
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 357 TYEPNDDECLNPWRDDTEEEEL 422
TYE D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289
>SB_49774| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 306 HICIRVHVLHCKTWPQCHKLLLK 238
HIC V +HCK+ QC LL K
Sbjct: 116 HICRDVDDIHCKSEAQCQALLNK 138
>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
Length = 601
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 360 YEPNDDECLNPWRDD-TEEEELARAVQNAAITE 455
+ N D+C+N + T + EL R +QNAA TE
Sbjct: 468 HNANSDDCINNRGEPYTTKAELVRILQNAAETE 500
>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
Length = 477
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 419 LFFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYF 279
LFF +T +F + FI + F K + F++ F CMYF
Sbjct: 13 LFFLLFLTV---SFHVFMFIVVPYVTKRPFFKNIPAIFMYIFMCMYF 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,520,177
Number of Sequences: 59808
Number of extensions: 410104
Number of successful extensions: 1145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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