Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060437.seq
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z46829-1|CAA86862.1| 375|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative acti... 29 4.1
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 29 4.1
Z70309-7|CAB54292.1| 209|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF031519-1|AAC78763.1| 930|Caenorhabditis elegans myotubularin ... 27 9.4
>U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical
protein D2096.8 protein.
Length = 316
Score = 48.0 bits (109), Expect = 6e-06
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 482 YRASNGS-QCKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTL 652
Y+A+ KGI DFW R +++E ++EHD PIL L D+ +DP F +
Sbjct: 101 YKAAEADPSAKGIKDFWLTALRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKI 158
>Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical
protein F09B9.2b protein.
Length = 639
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -1
Query: 531 YQKSGIPLHWDPLEA-R*PCHPSFPH 457
++K +PLHWDP A R P PH
Sbjct: 441 HKKQRLPLHWDPRNASRTPSGKKMPH 466
>Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical
protein F09B9.2a protein.
Length = 625
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -1
Query: 531 YQKSGIPLHWDPLEA-R*PCHPSFPH 457
++K +PLHWDP A R P PH
Sbjct: 427 HKKQRLPLHWDPRNASRTPSGKKMPH 452
>Z46829-1|CAA86862.1| 375|Caenorhabditis elegans Hypothetical
protein T14B1.1 protein.
Length = 375
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 387 NPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD 500
+P RD+ EE LA+ ++ A GE+++ + EP D
Sbjct: 6 DPGRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEPNAD 43
>AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative
actin-binding proteinUNC-115 protein.
Length = 639
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -1
Query: 531 YQKSGIPLHWDPLEA-R*PCHPSFPH 457
++K +PLHWDP A R P PH
Sbjct: 441 HKKQRLPLHWDPRNASRTPSGKKMPH 466
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 536 IFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS 643
IF V + + + + P+L L ++V H+DP S
Sbjct: 1145 IFEQVRLEKDRLPANSYPVLSKLSTVRVSQHDDPTS 1180
>Z70309-7|CAB54292.1| 209|Caenorhabditis elegans Hypothetical
protein R102.8 protein.
Length = 209
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 330 HKEACKVFHICIRVHVLHCKTWPQCHKLLLKSSQGADSPTNIR 202
HK+A +V + + V+ L CKT CH +++ GA NI+
Sbjct: 150 HKKAQQV-ELVLTVNTL-CKTENSCHYRIIQDISGAQGEKNIQ 190
>Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical
protein T24A11.1b protein.
Length = 1006
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 393 WRDDTEEEELARAVQNAAITEGEEKK 470
WR+ T+E+ + AV+ + I EGEEKK
Sbjct: 337 WRNPTDEKIIEEAVKASRI-EGEEKK 361
>Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical
protein T24A11.1a protein.
Length = 938
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 393 WRDDTEEEELARAVQNAAITEGEEKK 470
WR+ T+E+ + AV+ + I EGEEKK
Sbjct: 333 WRNPTDEKIIEEAVKASRI-EGEEKK 357
>AF031519-1|AAC78763.1| 930|Caenorhabditis elegans myotubularin
homologous protein 1 protein.
Length = 930
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 393 WRDDTEEEELARAVQNAAITEGEEKK 470
WR+ T+E+ + AV+ + I EGEEKK
Sbjct: 337 WRNPTDEKIIEEAVKASRI-EGEEKK 361
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,226,250
Number of Sequences: 27780
Number of extensions: 304749
Number of successful extensions: 952
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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