Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060437.seq
(681 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 45 5e-05
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta... 45 5e-05
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 42 5e-04
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil... 36 0.025
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil... 35 0.043
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 32 0.40
At2g26530.1 68415.m03183 expressed protein 32 0.40
At1g67140.1 68414.m07638 expressed protein 30 1.2
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea... 30 1.6
At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2) ide... 28 6.6
At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2) ide... 28 6.6
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = +2
Query: 509 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTL 652
KG+P FW +N ++SE + E DE LK L+DIK E+P F L
Sbjct: 125 KGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKL 172
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 178 AEAMASLPPNVRRRIRALRTLQKEFVTLRPSF 273
++ + +L PNVR+R+ ALR +Q + L F
Sbjct: 41 SDVLENLTPNVRKRVDALRDIQSQHDELEAKF 72
>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 379
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = +2
Query: 509 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTL 652
KG+PDFW +N + +E + E DE LK L+DIK E+P F L
Sbjct: 124 KGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGFKL 171
>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 374
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +2
Query: 509 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTL 652
KG+P FW +N ++SE + E DE L L+DIK E+P F L
Sbjct: 124 KGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGFKL 171
>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105|SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
PF00956: Nucleosome assembly protein (NAP)
Length = 256
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 509 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHED 634
K IPDFW F + L E++ E D+ I K L + V+ +D
Sbjct: 71 KTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKD 112
>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
protein similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 329
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 509 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHED 634
+G+P+FW + ML+ + E DE LK L+DI+ ED
Sbjct: 126 EGVPNFWLIAMKTNEMLANEITERDEAALKYLKDIRSCRVED 167
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 399 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVRVSQTFGTTYSGMSQ 554
DD +EEE + + +I E EEK D +E P D N++ + T Y+ S+
Sbjct: 43 DDDDEEEAVSELNSLSIKE-EEKPDS-ILEEPEDSNIKAVTSGDTPYTSASR 92
>At2g26530.1 68415.m03183 expressed protein
Length = 317
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 244 KEFVTLRPSFTVKYMHSNANMKNFTSLFMKSEXXXXXXXXXXXXXNVSTHGVMTLKKKS 420
K+F+ R + + H+ ++K FTSLF K E +VS H + KK+
Sbjct: 238 KDFLLFRSASEGRARHNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 30.3 bits (65), Expect = 1.2
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Frame = -2
Query: 641 LWGLHAFAL*YLASILELVHHVLASFR*ALRHS*ICCTKSLGYPYI--GIHWRLDSLVIL 468
+W LH L A+ L V HV A+ AL I T+ G+ + GI ++++V +
Sbjct: 816 IWALHGLLLTIEAAGLSFVSHVQAALGLALD---ILLTEESGWIDLSQGIGRLINAIVAV 872
Query: 467 LFLTLSDGSILYRPS*LFFFSVITPWVETFIIIRFICA 354
L LS GSIL+ + I+ W E ++ ++ A
Sbjct: 873 LGPELSPGSILFSRC-KSVIAEISSWQEIPTLLEYVNA 909
>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P24733 myosin heavy chain,
striated muscle [Aequipecten irradians]
Length = 342
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 360 YEPND-DECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNV 509
+E N+ +E ++ +R + E+L + VQN A+ +EKK+D P D NV
Sbjct: 199 HELNEMEELVSDFR--AQNEKLLKKVQNCAVEHNKEKKEDIDGPGPGDNNV 247
>At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 810
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 408 EEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVRVSQ 521
+ E +R QNA+ + + DD +EP M ++R++Q
Sbjct: 217 DSNEPSRDHQNASRHREDPESDDILLEPQMSEDIRIAQ 254
>At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 809
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 408 EEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVRVSQ 521
+ E +R QNA+ + + DD +EP M ++R++Q
Sbjct: 217 DSNEPSRDHQNASRHREDPESDDILLEPQMSEDIRIAQ 254
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,241,764
Number of Sequences: 28952
Number of extensions: 277358
Number of successful extensions: 849
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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