Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060436.seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 7e-32
SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14) 109 1e-24
SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0) 109 1e-24
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 7e-24
SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16) 104 5e-23
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0) 94 9e-20
SB_57708| Best HMM Match : Aldedh (HMM E-Value=0) 77 1e-14
SB_58786| Best HMM Match : Aldedh (HMM E-Value=0) 75 3e-14
SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23) 73 1e-13
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10
SB_26122| Best HMM Match : Aldedh (HMM E-Value=0) 57 1e-08
SB_22312| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_6771| Best HMM Match : Aldedh (HMM E-Value=0) 49 2e-06
SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_20180| Best HMM Match : Aldedh (HMM E-Value=5.3e-08) 42 3e-04
SB_30067| Best HMM Match : Aldedh (HMM E-Value=1.4) 38 0.006
SB_16513| Best HMM Match : Aldedh (HMM E-Value=9.9e-05) 37 0.014
SB_52934| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_38116| Best HMM Match : APC8 (HMM E-Value=3.3) 29 3.8
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077) 28 6.6
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 27 8.7
SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 134 bits (323), Expect = 7e-32
Identities = 66/100 (66%), Positives = 77/100 (77%), Gaps = 1/100 (1%)
Frame = +2
Query: 254 ATEVGKLIQRGAA-STIKRITLELGGKSPNIVLADTDLPRAVEAAHNALFYNMGQCCXXG 430
+TEVG+LIQ +A S +KR+TLELGGKSPNIV AD+D+ AVE AH ALF+N GQCC G
Sbjct: 555 STEVGRLIQEASAKSNLKRLTLELGGKSPNIVFADSDMDYAVEMAHEALFFNQGQCCSAG 614
Query: 431 SRTFVXDKIYDQFVELSAERANRRVVGTPFRPXVEQGPQI 550
SRTFV D IYD+FV+ S +RA R VG PF VEQGPQI
Sbjct: 615 SRTFVQDTIYDEFVKKSVKRAKARTVGDPF-DSVEQGPQI 653
Score = 122 bits (295), Expect = 2e-28
Identities = 57/83 (68%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
Frame = +3
Query: 9 GQIIPWNFPILMAAWKLGPALATGCTVVMKPAEQTPLTALYIAQLVKEAGFPPGVVNMLP 188
G I PWNFP+ MA+ K+ PALA G V++KPAEQTPLTALY LVKEAGFP GVVN++P
Sbjct: 472 GAITPWNFPLNMASVKIAPALACGNVVILKPAEQTPLTALYFCALVKEAGFPAGVVNVIP 531
Query: 189 GYGDT-GAAIVDHPDVDKVAFTG 254
GYG T GAAI H D+DKV+FTG
Sbjct: 532 GYGPTAGAAITTHLDIDKVSFTG 554
>SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14)
Length = 266
Score = 109 bits (263), Expect = 1e-24
Identities = 48/74 (64%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Frame = +3
Query: 9 GQIIPWNFPILMAAWKLGPALATGCTVVMKPAEQTPLTALYIAQLVKEAGFPPGVVNMLP 188
G I+ WNFP+L+A WKLGPALATGCT V+KPAE TPLTAL +A+L EAG+P GVVN++
Sbjct: 192 GAIVAWNFPLLLACWKLGPALATGCTTVLKPAEDTPLTALKLAELALEAGYPAGVVNVVT 251
Query: 189 GYG-DTGAAIVDHP 227
G G + GAA+ HP
Sbjct: 252 GLGHEAGAALSSHP 265
>SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
Length = 1485
Score = 109 bits (263), Expect = 1e-24
Identities = 56/97 (57%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Frame = +2
Query: 260 EVGKLIQRGAA-STIKRITLELGGKSPNIVLADTDLPRAVEAAHNALFYNMGQCCXXGSR 436
EVG+LIQ AA S +KR+TLELGGKSPNIV AD DL AVE + LF N GQCC G+R
Sbjct: 1389 EVGRLIQETAAKSNLKRVTLELGGKSPNIVFADADLDWAVEMSCLGLFINQGQCCCAGTR 1448
Query: 437 TFVXDKIYDQFVELSAERANRRVVGTPFRPXVEQGPQ 547
FV + I+D+FV RA RVVG P QGPQ
Sbjct: 1449 IFVEESIHDEFVRQCVARAKARVVGDPLEEKTVQGPQ 1485
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/50 (72%), Positives = 40/50 (80%)
Frame = +3
Query: 9 GQIIPWNFPILMAAWKLGPALATGCTVVMKPAEQTPLTALYIAQLVKEAG 158
G I PWNFP+LM KL PALA GC V++KPAEQTPLTALY+A LVKE G
Sbjct: 1342 GAITPWNFPLLMEGLKLAPALACGCVVILKPAEQTPLTALYLASLVKEVG 1391
>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 107 bits (257), Expect = 7e-24
Identities = 47/82 (57%), Positives = 60/82 (73%)
Frame = +3
Query: 9 GQIIPWNFPILMAAWKLGPALATGCTVVMKPAEQTPLTALYIAQLVKEAGFPPGVVNMLP 188
G I+PWNFP+++ WK+ PALA G TVV+KPA T L+AL A++ EAG PPGV N++
Sbjct: 772 GGIVPWNFPLMLLCWKVCPALAMGNTVVLKPATYTRLSALLFAEICAEAGLPPGVFNVVT 831
Query: 189 GYGDTGAAIVDHPDVDKVAFTG 254
G G G+ + HPDVDKVAFTG
Sbjct: 832 GNGAFGSQLAGHPDVDKVAFTG 853
Score = 74.5 bits (175), Expect = 6e-14
Identities = 36/96 (37%), Positives = 56/96 (58%)
Frame = +2
Query: 254 ATEVGKLIQRGAASTIKRITLELGGKSPNIVLADTDLPRAVEAAHNALFYNMGQCCXXGS 433
+TEVGKL+++ A + K+++LELGGKSP +V DL AVE +A+++N GQ C GS
Sbjct: 854 STEVGKLLRQLTAGSGKKLSLELGGKSPFVVFDSADLDSAVEGVVDAIWFNQGQVCSAGS 913
Query: 434 RTFVXDKIYDQFVELSAERANRRVVGTPFRPXVEQG 541
R V + + ++ ER +G P ++ G
Sbjct: 914 RLLVQETCAQRMIKKIKERMTHLRLGDPLDKSIDMG 949
>SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16)
Length = 266
Score = 104 bits (250), Expect = 5e-23
Identities = 45/83 (54%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
Frame = +3
Query: 9 GQIIPWNFPILMAAWKLGPALATGCTVVMKPAEQTPLTALYIAQLVKEAGFPPGVVNMLP 188
G I PWN P+ + ++K+ PA+A+GCTVV KP+E T +TA +A+L+ +AGFPPGV+N++
Sbjct: 151 GLISPWNLPLYLLSFKIAPAVASGCTVVCKPSEMTSVTAWMMAELINDAGFPPGVINIVF 210
Query: 189 GYGD-TGAAIVDHPDVDKVAFTG 254
G G TG+AIV HPDV ++FTG
Sbjct: 211 GTGSRTGSAIVQHPDVHLISFTG 233
>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 880
Score = 93.9 bits (223), Expect = 9e-20
Identities = 41/82 (50%), Positives = 57/82 (69%)
Frame = +3
Query: 9 GQIIPWNFPILMAAWKLGPALATGCTVVMKPAEQTPLTALYIAQLVKEAGFPPGVVNMLP 188
G I WN+PI A WK+ PA+A G T+V KP+ TP+ A+ +A ++ EAG PPGVVN++
Sbjct: 415 GGIGAWNYPIQTACWKIAPAIACGNTIVYKPSPLTPMNAVALADILTEAGVPPGVVNIIQ 474
Query: 189 GYGDTGAAIVDHPDVDKVAFTG 254
G G+TG + P+V KV+FTG
Sbjct: 475 GGGETGEMLSKDPNVAKVSFTG 496
Score = 83.0 bits (196), Expect = 2e-16
Identities = 42/95 (44%), Positives = 51/95 (53%)
Frame = +2
Query: 266 GKLIQRGAASTIKRITLELGGKSPNIVLADTDLPRAVEAAHNALFYNMGQCCXXGSRTFV 445
G+ I A IK +TLELGGKSP I+ D D+ AV A A F + GQ C G+R FV
Sbjct: 501 GQKIMASCADGIKHVTLELGGKSPLIIFKDADMANAVSGALMANFLSQGQVCSNGTRVFV 560
Query: 446 XDKIYDQFVELSAERANRRVVGTPFRPXVEQGPQI 550
D I D+F+E ER VG P P + G I
Sbjct: 561 EDSIKDEFLEKVVERTKNIRVGDPMAPDTQMGAMI 595
>SB_57708| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 528
Score = 77.0 bits (181), Expect = 1e-14
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Frame = +3
Query: 24 WNFPILMAAWKLGPALATGCTVVMKPAEQTPLTALYIAQLVKEAGFPPGVVNMLPGYGDT 203
WNFP+ M K ALA GCTV++KP+E+TP AL + QL +EAGFP GV+N +P D
Sbjct: 149 WNFPLGMITRKAAAALAAGCTVIIKPSEETPFCALALQQLAEEAGFPAGVINTIPCSRDR 208
Query: 204 GAAIVD---HPD-VDKVAFTG 254
+ D D V K++FTG
Sbjct: 209 VNEVTDTVLKSDLVSKMSFTG 229
Score = 64.5 bits (150), Expect = 6e-11
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Frame = +2
Query: 254 ATEVGKLIQRGAASTIKRITLELGGKSPNIVLADTDLPRAVEAAHNALFYNMGQCCXXGS 433
+T GK++ T+K+++LELGG +P IV ++ AV+ A + N Q C +
Sbjct: 230 STATGKILMAKCVDTVKKMSLELGGNAPFIVFNSANIESAVKGALICKYRNTAQTCICAN 289
Query: 434 RTFVXDKIYDQFVELSAERANRRV-VGTPFRPXVEQGPQI 550
R V D IYD+F + AE ++++ +G QGP I
Sbjct: 290 RIIVQDGIYDEFAKRFAEAVDQQLKIGNGMDAGTTQGPLI 329
>SB_58786| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 421
Score = 75.4 bits (177), Expect = 3e-14
Identities = 39/99 (39%), Positives = 55/99 (55%)
Frame = +2
Query: 254 ATEVGKLIQRGAASTIKRITLELGGKSPNIVLADTDLPRAVEAAHNALFYNMGQCCXXGS 433
+T VG+ + + +A T+K+++LELGG +P I+ D +L +AV N+ F N GQ C +
Sbjct: 169 STAVGQDLYQKSAKTLKKLSLELGGNAPFIIFDDANLDKAVSGLINSKFRNAGQTCVCAN 228
Query: 434 RTFVXDKIYDQFVELSAERANRRVVGTPFRPXVEQGPQI 550
R FV KIYDQF+E VG V GP I
Sbjct: 229 RVFVDSKIYDQFIEKLIPVVQDLKVGNGLDSGVNIGPLI 267
Score = 69.3 bits (162), Expect = 2e-12
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +3
Query: 15 IIPWNFPILMAAWKLGPALATGCTVVMKPAEQTPLTALYIAQLVKEAGFPPGVVNMLPGY 194
I PWNFPI M K A+A GCT++ +P+ QTPL+AL + +L +A P GV N++ G
Sbjct: 88 ITPWNFPIAMLVRKASSAIACGCTMIARPSGQTPLSALALGELALKAEIPDGVFNIIVGS 147
Query: 195 GD-TGAAIVDHPDVDKVAFTG 254
+ D + K++FTG
Sbjct: 148 SSLISNKLCDSDIIRKLSFTG 168
>SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)
Length = 275
Score = 73.3 bits (172), Expect = 1e-13
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +3
Query: 9 GQIIPWNFPILMAAWKLGPALATGCTVVMKPAEQTPLTALYIAQLVKEAGFPPGVVNMLP 188
G I PWNFP AWK+ PALA G +V KPA Q P +A + +++ P G N++
Sbjct: 146 GIITPWNFPTATGAWKIAPALAFGNAIVWKPANQVPASAWALTEIISRQNLPAGTFNLVM 205
Query: 189 GYG-DTGAAIVDHPDVDKVAFTG 254
G G D G +++ ++ + FTG
Sbjct: 206 GPGADVGDVMINSRGINALTFTG 228
Score = 34.3 bits (75), Expect = 0.076
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 260 EVGKLIQRGAASTIKRITLELGGKSPNIVLADTDLPRAVEAA 385
E G+ + A + + LE+G K+ IVL D DL AVE A
Sbjct: 231 ETGRKVAAATAVNLVKCQLEMGSKNALIVLDDADLDNAVECA 272
>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 61.7 bits (143), Expect = 4e-10
Identities = 29/52 (55%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Frame = +3
Query: 102 AEQTPLTALYIAQLVKEAGFPPGVVNMLPGYGD-TGAAIVDHPDVDKVAFTG 254
A+ TP+TAL A+L AGFP GV+N+LPG G G I +HPDV K+ FTG
Sbjct: 755 AKVTPMTALKFAELAARAGFPKGVINILPGSGSVVGNRICEHPDVRKLGFTG 806
>SB_26122| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 462
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +3
Query: 15 IIPWNFPILMAAWKLGPALATGCTVVMKPAEQTPLTALYIAQLVKEAGFPPGVVNMLPGY 194
I W+ + L PA+A+G VV+KP+ PLT +A+++K++G P GVVN++ G
Sbjct: 158 ITSWSQALPSILRHLVPAMASGNCVVIKPSCLAPLTVHLLAKVLKDSGIPKGVVNIVYGR 217
Query: 195 GDT-GAAIVDHPDVDKVAFTG 254
G+ G + H DV VA G
Sbjct: 218 GEVIGRILARHHDVAAVALVG 238
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +2
Query: 299 IKRITLELGGKSPNIVLADTDLPRAVEAAHNALFY-NMGQCCXXGSRTFVXDKIYDQFVE 475
+KR++ ELG +V D DL + A F N GQ +R FV + + F E
Sbjct: 254 VKRVSYELGNCHAMVVYDDVDLDELIPTVIKASFLCNAGQHPHAVNRIFVHGAVLEIFTE 313
Query: 476 LSAERANRRVVGTPFRPXVEQGPQI 550
+ + +G P + GP I
Sbjct: 314 KLVKAIRKIKIGNPQESSTQIGPLI 338
>SB_22312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 54.0 bits (124), Expect = 9e-08
Identities = 24/35 (68%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Frame = +3
Query: 153 AGFPPGVVNMLPGYGDT-GAAIVDHPDVDKVAFTG 254
AGFP GVVN++PG+G T G AI H DVDK+AFTG
Sbjct: 1 AGFPEGVVNIVPGFGPTAGGAIASHMDVDKIAFTG 35
>SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 523
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +3
Query: 15 IIPWNFPILMAAWKLGPALATGCTVVMKPAEQTPLTALYIAQLVKEAGFPPGVVNMLPGY 194
+ P+NF + PAL G V+ KPA L+ + ++ +EAG P GV+N +P
Sbjct: 184 VSPFNFTAIGGNLAGTPALM-GNVVLWKPASTAILSQYRVMEMFQEAGLPDGVINFVPSS 242
Query: 195 GDT-GAAIVDHPDVDKVAFTG 254
G T G A+ P + V FTG
Sbjct: 243 GSTFGNAMTTSPHLAAVNFTG 263
>SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/75 (34%), Positives = 34/75 (45%)
Frame = +2
Query: 263 VGKLIQRGAASTIKRITLELGGKSPNIVLADTDLPRAVEAAHNALFYNMGQCCXXGSRTF 442
VGKL+ AA + R+TLELGGKSP + D D+ F N GQ C
Sbjct: 160 VGKLVMAAAAKNLTRVTLELGGKSPCYIDEDCDMKTVARRICWGKFTNSGQTCVAPDYVL 219
Query: 443 VXDKIYDQFVELSAE 487
I +F++ E
Sbjct: 220 CNPGIQSKFIKSMKE 234
Score = 35.5 bits (78), Expect = 0.033
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = +3
Query: 15 IIPWNFPILMAAWKLGPALATGCTVVMKPAEQTPLTALYIAQLVKEAGFPPGVVNMLPGY 194
I WN+P+ + L A+A G V+KP+E TA +A LV + P + G
Sbjct: 79 ISAWNYPVQLIFLPLVGAIAGGNCAVLKPSEVASATAQLVADLVPKYLDPDCYPVVNGGV 138
Query: 195 GDTGAAIVDHPDVDKVAFTG 254
+T + + DK+ +TG
Sbjct: 139 PETQQLL--NQKFDKIFYTG 156
>SB_20180| Best HMM Match : Aldedh (HMM E-Value=5.3e-08)
Length = 266
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 305 RITLELGGKSPNIVLADTDLPRAV-EAAHNALFYNMGQCCXXGSRTFVXDKIYDQFVELS 481
R+ L L K+P IVL D D+ AV E + AL +N GQ C FV + I ++F +
Sbjct: 10 RLVLGLEAKNPGIVLPDCDIDLAVRECVNGALAFN-GQRCTALKILFVHEDIVEEFNQKF 68
Query: 482 AERANRRVVGTPFRPXVEQGP 544
E+ G P+ V P
Sbjct: 69 IEQVENLKYGNPWETGVNITP 89
>SB_30067| Best HMM Match : Aldedh (HMM E-Value=1.4)
Length = 119
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 398 FYNMGQCCXXGSRTFVXDKIYDQFVELSAERANRRVVGTP 517
F N G+ C SR FV IYD F+++ + + +VG P
Sbjct: 4 FANQGEICLCTSRIFVQRSIYDNFLDMFVQETRKLIVGPP 43
>SB_16513| Best HMM Match : Aldedh (HMM E-Value=9.9e-05)
Length = 301
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 269 KLIQRGAASTIKRITLELGGKSPNIVLADTDLPRAVEAAHNALFYNMGQ 415
K++ T+K+++LELGG +P +V D+ +AV A F N Q
Sbjct: 153 KILMAKCVVTVKKMSLELGGNAPFVVFNSADIDKAVNGAVVYKFRNTAQ 201
>SB_52934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 416 CCXXGSRTFVXDKIYDQFVELSAERANRRVVGTPFRPXVEQGPQ 547
C R FV + I+D+FV + + +G P + GPQ
Sbjct: 63 CYGTDGRLFVEESIHDEFVNRLVDELKKLKIGDPLDTATDHGPQ 106
>SB_38116| Best HMM Match : APC8 (HMM E-Value=3.3)
Length = 326
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 299 SSTPRRAGSACPPPSPGEGHFIHVGV 222
+S RR S P PSP E ++H+GV
Sbjct: 72 TSKQRRKSSTPPQPSPPESFWLHLGV 97
>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
Length = 1043
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 299 SSTPRRAGSACPPPSPGEGH 240
S +P R+GS P SPG GH
Sbjct: 659 SYSPERSGSHSEPQSPGRGH 678
>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 157 PASLTS*AMYSAVSGVCSAGFMTTVQPVARAGPSFQAA 44
PA+ A ++S GF T+ QPVA G SF A
Sbjct: 467 PATTFPVASTGSMSAAAGVGFGTSSQPVAAGGLSFPTA 504
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 35 YIDGGLEARASSGDGLY-CGHEAGRADAAHSAVHRSTSQGSRF 160
YI G++A S +G+Y H+A RAD H + Q RF
Sbjct: 258 YIKNGVDA--DSIEGIYKAAHQAIRADPVHKKAEKKDVQLKRF 298
>SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 323 PAPT*CALSSTPRRAGSACPPPSP 252
PAPT LSSTP + PPP P
Sbjct: 361 PAPTPAPLSSTPCAPFAPPPPPPP 384
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,246,208
Number of Sequences: 59808
Number of extensions: 340617
Number of successful extensions: 1075
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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