Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060436.seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                28   0.060
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.32 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.75 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 0.060
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 205 GPLSWTTPTWIKWPSPGDGGGQADPARRGVDDKAHHVGAG 324
           G  S+TT T     +PG G   A PA  GV D      +G
Sbjct: 221 GRPSYTTATMATTSTPGSGSLPASPADSGVSDVESSTSSG 260


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 318 SNVMRFIVDAAPRWISLPTSVA 253
           S+  R +V   PRWI  PT V+
Sbjct: 695 SHTQRLVVHVPPRWIVEPTDVS 716


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 551  ESGVPAPXRAGKGSRPRGG 495
            E+  P P   GKG+RP+ G
Sbjct: 1020 EANKPKPATGGKGTRPKRG 1038


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -1

Query: 253 PVKA-TLSTSGWSTIAAPVSP 194
           P +A +LSTSG S I  PVSP
Sbjct: 304 PAEAESLSTSGSSGILTPVSP 324


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -3

Query: 173 DPGRETCFLD*LSDVQRCERRLLGRLHDHSTTRRQSWPELPSRHQ 39
           DPG  T  +  L    +   R     H  S+   QSW  L S H+
Sbjct: 52  DPGAITGLVASLDGALKLRIRCSDVHHFESSFNAQSWQRLTSLHE 96


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -2

Query: 375 TARGRSVSASTMLGDLPPSSNVMRFIVDAAPRWISLPTSVA 253
           TAR       T       +S+     V+  PRWI  PT  A
Sbjct: 649 TARHAGEYVCTAENAAGTASHSTTLTVNVPPRWILEPTDKA 689


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,201
Number of Sequences: 438
Number of extensions: 2978
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)