Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060435.seq
         (668 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...   132   7e-30
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther...    57   3e-07
UniRef50_Q4P8E8 Cluster: Putative uncharacterized protein; n=1; ...    33   8.2  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score =  132 bits (319), Expect = 7e-30
 Identities = 61/74 (82%), Positives = 64/74 (86%)
 Frame = -3

Query: 231  DSIRKYMRSASEXYFXKAMXHDNRLIVAAADYSPNPDHAGASHRRRPRHVXTDPSDPITF 52
            +SIRK+M+S SE YF KAM HDNRLIVAAADYSPNPDHAGASHRRRPRHV TDPSDPIT 
Sbjct: 870  ESIRKHMKSVSERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITL 929

Query: 51   ALDAFSSNXRXXLR 10
            ALD FSSN R  LR
Sbjct: 930  ALDTFSSNTRSRLR 943


>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
           mylitta|Rep: Reverse transcriptase-like - Antheraea
           mylitta (Tasar silkworm)
          Length = 186

 Score = 57.2 bits (132), Expect = 3e-07
 Identities = 29/64 (45%), Positives = 39/64 (60%)
 Frame = -3

Query: 228 SIRKYMRSASEXYFXKAMXHDNRLIVAAADYSPNPDHAGASHRRRPRHVXTDPSDPITFA 49
           SI  Y++S +  YF KA  H + L+V+AA+Y P P+   A  RRRPRH+  DP D IT  
Sbjct: 82  SIWTYVKSLTISYFEKAANHPSPLVVSAANYQPVPN--AARPRRRPRHIFIDPPDEITAV 139

Query: 48  LDAF 37
            D +
Sbjct: 140 NDQY 143


>UniRef50_Q4P8E8 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 693

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -3

Query: 156 IVAAADYSPNPDHAGASHRRRPRHVXTDPSDP---ITFALDAFSSNXRXXLRXVP 1
           +++ A   P+  H  A H RR R++  DPS+P     ++ DAF    R   R  P
Sbjct: 15  VLSTASLEPSL-HGRARHHRRTRNLHADPSNPSDAAVYSRDAFGDRPRIQARSEP 68


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 486,602,991
Number of Sequences: 1657284
Number of extensions: 7333944
Number of successful extensions: 14197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14193
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)