Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060435.seq
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   4.0  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.9  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   6.9  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 112 SQSPSTP*TRXYGSIRSNNLC 50
           S   STP  R YG++  N  C
Sbjct: 414 SDQRSTPSPRVYGNVNENQDC 434


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 49  CKGYWI*WIRXDVSRASTVTGSCMI 123
           CKG++   +R D+S A     +C+I
Sbjct: 106 CKGFFKRTVRKDLSYACREEKNCII 130


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/39 (20%), Positives = 21/39 (53%)
 Frame = +3

Query: 375 ASLNRLINL*LFLSLVSREMQATECMGSTLTASYLQFTL 491
           A + + + L + + + + E + + C+G T+T +   F +
Sbjct: 304 AKVTKTVLLGVKIDICNEEERNSHCLGGTITRTMWYFQI 342


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,463
Number of Sequences: 336
Number of extensions: 1991
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)