Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060435.seq
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   5.6  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   7.5  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   7.5  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   9.9  

>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 149 PPLTTPRILIMQEPVTVDALDTSLRIHQIQ*PLH*MP 39
           PP+ +PR     +PV V+A+  S  +   Q PLH  P
Sbjct: 270 PPIPSPR---PPQPVAVEAIQQSRAVISQQLPLHVSP 303


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 126 PDHAGASHRRRPRHVXTDPSDPITFALDAFSS 31
           P HA +SH+     V +DP+ P     D   S
Sbjct: 430 PKHASSSHKSSIMSVNSDPTSPKVSKFDTSDS 461


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 487 LLSYMFISGLFINNRFRXKNYSSDFXSLR 573
           L +++  SGLF N  F     SS+F SLR
Sbjct: 459 LANHLSSSGLFDNGLFSSGGLSSNFSSLR 487


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 47  NAKVIGSDGSVXTCLGRRR 103
           N++ +GS GS  T LGRRR
Sbjct: 3   NSRSVGSTGSNNTPLGRRR 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,717
Number of Sequences: 5004
Number of extensions: 32939
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)