Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060435.seq
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    32   0.32 
AF026215-3|AAB71323.3|  563|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 132 PNPDHAGASHRRRPRHVXTDPSD 64
           PN DH G +H RR R+   DPSD
Sbjct: 242 PNVDHIGHNHHRRKRNHDDDPSD 264



 Score = 30.7 bits (66), Expect = 0.98
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 132 PNPDHAGASHRRRPRHVXTDPSD 64
           PN DH G +HRR+  H   DPSD
Sbjct: 198 PNVDHTGHNHRRKRNH-DDDPSD 219



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -3

Query: 132 PNPDHAGASHRRRPRHVXTDPSD 64
           PN DH G +HRRR R    DPSD
Sbjct: 287 PNVDHTGHNHRRR-RDQDDDPSD 308



 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 132 PNPDHAGASHRRRPRHVXTDPSD 64
           PN DH G +HR + R +  DPSD
Sbjct: 132 PNVDHTGHNHRVK-RSIDDDPSD 153


>AF026215-3|AAB71323.3|  563|Caenorhabditis elegans Hypothetical
           protein F09G2.5 protein.
          Length = 563

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 424 VGRCKQLNAWVPH*QRLIFNLLLSYMFIS 510
           V   K L+ W+   Q LIF +LL Y F+S
Sbjct: 393 VSYIKALDIWLTFSQALIFLVLLEYSFVS 421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,313,095
Number of Sequences: 27780
Number of extensions: 178541
Number of successful extensions: 344
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)