Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060435.seq
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24300.2 68415.m02904 calmodulin-binding protein similar to c...    31   0.92 
At2g24300.1 68415.m02905 calmodulin-binding protein similar to c...    31   0.92 
At4g31000.1 68417.m04402 calmodulin-binding protein similar to c...    29   3.7  
At3g59020.1 68416.m06578 importin beta-2 subunit family protein ...    27   8.5  

>At2g24300.2 68415.m02904 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 599

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 460 H*QRLIFNLLLSYMFISGLFINNRFRXKNYSSDFXSLRCDLIVXLSYQNWYDYINQSGHR 639
           H   ++FN +  +    GL  N +F      +    +  D++V L+Y+NW+  I   G  
Sbjct: 329 HATGVVFNHIYEFR---GLITNGQFLSLESLNHDQKISADILVKLAYENWHKAIEYDG-- 383

Query: 640 MKMFHC 657
            K+ +C
Sbjct: 384 -KLLNC 388


>At2g24300.1 68415.m02905 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 552

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 460 H*QRLIFNLLLSYMFISGLFINNRFRXKNYSSDFXSLRCDLIVXLSYQNWYDYINQSGHR 639
           H   ++FN +  +    GL  N +F      +    +  D++V L+Y+NW+  I   G  
Sbjct: 282 HATGVVFNHIYEFR---GLITNGQFLSLESLNHDQKISADILVKLAYENWHKAIEYDG-- 336

Query: 640 MKMFHC 657
            K+ +C
Sbjct: 337 -KLLNC 341


>At4g31000.1 68417.m04402 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]; contains non-consensus donor splice
           site AT at exon 4; supported by cDNA gi:17065559
          Length = 562

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/66 (22%), Positives = 28/66 (42%)
 Frame = +1

Query: 460 H*QRLIFNLLLSYMFISGLFINNRFRXKNYSSDFXSLRCDLIVXLSYQNWYDYINQSGHR 639
           H   ++FN +  +    GL  N  F      +    +  D +V  +Y+NW+  +   G  
Sbjct: 329 HQTAVVFNHIYEFQ---GLIANGHFLSSESLNHDQKISADTLVKTAYENWHKVVEYGG-- 383

Query: 640 MKMFHC 657
            K+ +C
Sbjct: 384 -KLLNC 388


>At3g59020.1 68416.m06578 importin beta-2 subunit family protein
           similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
           GI:7542336; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1112

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 159 LIVAAADYSPNPDHAGASHRRRPRH 85
           LIV AA +SPNPD   A+ +   +H
Sbjct: 8   LIVGAAAFSPNPDERRAAEQSLNQH 32


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,614,529
Number of Sequences: 28952
Number of extensions: 163277
Number of successful extensions: 314
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)