Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060434.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.4  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    25   7.7  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   7.7  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   7.7  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 50  YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 184
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = -2

Query: 354 MGEQSNAWRXFXRNDRKSRHRRIKKQRRYERLAAQASYPCGNFSGTSC*KLFILKDR*AV 175
           +GE ++ W         S    + K +R   LAA    P  N   ++     +  DR  V
Sbjct: 401 VGENNDFWNRMLHRSHLSTMAALHKSQRSHDLAANEHAPILNPKNSALNPRLVTNDRVKV 460

Query: 174 LSQSL 160
            S SL
Sbjct: 461 KSPSL 465


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 258 AAQASYPCGNFSGTSC 211
           AA A   CG +SGTSC
Sbjct: 334 AAAAKQCCGGYSGTSC 349


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 167  SPYAY*TSGSSQLLPFCSTRGF 102
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,073
Number of Sequences: 5004
Number of extensions: 53684
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)