Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060434.seq
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     30   1.5  
07_03_1086 + 23858419-23859423,23859527-23859610                       29   2.6  
10_08_0500 - 18357828-18358649                                         29   4.5  
05_02_0165 - 7256178-7256444                                           28   7.9  
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544...    28   7.9  

>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 468 GHLVHALGRAAGGAXNP-SAGLCLNASKAEASLA 566
           G LV  L R  GG     SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>07_03_1086 + 23858419-23859423,23859527-23859610
          Length = 362

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
 Frame = +3

Query: 408 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAXNPSAGLCLNA-----SKAEASLAES 572
           LL    CD N A      +   LVHAL  AA  A   +A   L         A AS+  +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188

Query: 573 GKDMLTVEPRESGGSK 620
           G   L V   E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204


>10_08_0500 - 18357828-18358649
          Length = 273

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = -2

Query: 525 PRMGXLH--HRPLGRVHEPNVRNCGSSRTEQYYYRN 424
           PR G  H  H PL R        CGS+ T+  YY N
Sbjct: 86  PRQGGRHAGHPPLPRPPPRQCPRCGSANTKFCYYNN 121


>05_02_0165 - 7256178-7256444
          Length = 88

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 441 AQYERNRSFGHLVHALGRAAGGAXNPSAGLCLNASKAEASLAESGKDMLTVEPRE 605
           A   R+ S G    A+G+       P+ GLC     +E  + E+GK   T   R+
Sbjct: 20  ASQPRHWSAGLAARAVGQRCSDLCQPARGLCTCIKPSEQRVREAGKHPGTARYRK 74


>04_03_1018 +
           21753634-21753640,21754282-21754315,21754413-21754432,
           21754485-21755782
          Length = 452

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +3

Query: 483 ALGRAAGGAXNPSAGLCLNASKAEASLA 566
           ALG     A +P  G CLN  K+EASLA
Sbjct: 206 ALGLMPSSAASPQLG-CLNVLKSEASLA 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,076,183
Number of Sequences: 37544
Number of extensions: 403504
Number of successful extensions: 1070
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)