Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060434.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    30   1.6  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   2.9  
At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical t...    28   5.0  
At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containi...    28   5.0  

>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 381 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAXNPSAGL-CLNASKAEA 557
           T+V+++    L+ C CD +      N      +H   ++   + +P AGL C    +A+ 
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691

Query: 558 SLAESGKD 581
           S    GK+
Sbjct: 692 SPDSGGKE 699


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 89  LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 202
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical to
           alpha-glucosidase 1 [Arabidopsis thaliana] GI:2323344
          Length = 902

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 679 GFDVASRVLNAKTRLVKSHCLEPPDSRGSTVSISLPDSARL 557
           G D   +VL AK  L+K   +  PD +   + +SL  S RL
Sbjct: 45  GVDSNRQVLTAKLDLIKPSSVYAPDIKSLNLHVSLETSERL 85


>At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 638

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = +3

Query: 438 TAQYERNRSFGHLVHALGRAAGGAXNPSAGLCLNASKAEASLAESGKDM 584
           T  Y    S G LVH L      A +PSA    N  +   SLAE+  DM
Sbjct: 13  TITYYHPMSIGLLVHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDM 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,755,685
Number of Sequences: 28952
Number of extensions: 300038
Number of successful extensions: 753
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)